updating readme #35
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updating readme #35
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tmooney
reviewed
Mar 27, 2023
| [manual-workflows/README.md](manual-workflows/README.md) | ||
| - Running the Immunogenomics workflow (immuno.wdl) manually and | ||
| assuming the your input data is on a local machine that is not | ||
| associated with WASHU in any way. For example, an external institution |
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The style guide says to use WashU with only the W and U capitalized: https://marcomm.wustl.edu/items/washington-university-in-st-louis-washu/ Annoyingly it also says not to use WUSTL any more.
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| associated with WASHU in any way. For example, an external institution | |
| associated with WashU in any way. For example, an external institution |
| abstractions, this is the approach. | ||
| - Running the Immunogenomics workflow (immuno.wdl) manually and | ||
| assuming that your input data is stored on the compute1/storage1 | ||
| system at WASHU: [immuno-compute1](https://github.com/griffithlab/immuno_gcp_wdl_compute1) |
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| system at WASHU: [immuno-compute1](https://github.com/griffithlab/immuno_gcp_wdl_compute1) | |
| system at WashU: [immuno-compute1](https://github.com/griffithlab/immuno_gcp_wdl_compute1) |
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| 1. [manual submission to Cromwell](https://github.com/wustl-oncology/cloud-workflows/blob/main/manual-workflows/README.md), | ||
| 2. leveraging WUSTL's [GMS to automate interactions](https://github.com/wustl-oncology/cloud-workflows/tree/main/gms). |
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| 2. leveraging WUSTL's [GMS to automate interactions](https://github.com/wustl-oncology/cloud-workflows/tree/main/gms). | |
| 2. leveraging WashU's [GMS to automate interactions](https://github.com/wustl-oncology/cloud-workflows/tree/main/gms). |
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