Abstract: A curated list of resources for learning bioinformatics.
Purpose:
- Provide some of bioinformatics learning resources for beginners
- Provide a profiling of bioinformatics
Field:
- Next generation sequencing (NGS)
- Bioinformatics Data Analysis
Contents:
- Nature Method
- Nature Genetics
- Bioinformatics
- BMC Bioinformatics
- Nucleic Acids Research
- Genome Research
- UCSC
- NCBI
- ExPASy
- EMBL-EBI
- TCGA
- COSMIC
- St. Jude PeCan Data Portal
- DAVID Bioinformatics Resources
- cBioPortal
- Oncotator
- BWA
- STAR
- TMAP
- NovoAlign
- GMAP
- bowtie
- bowtie2
- tophat2
- hisat2
- Edean
- ABySS
- SSAHA2
- oases
- Velvet
- Trinity
- MapSplice2
- RUM
- GATK
- MuTect
- lofreq
- VarScan2
- freebayes
- TVC
- SomaticSniper
- speedseq
- FusionCatcher
- svtoolkit
- pindel
- breakdancer
- delly
- CNVkit
- biopython
- IRanges
- org.Hs.eg.db
- Biobase
- GenomicAlignments
- GenomicRanges
- Rsamtools
- jvarkit
- htslib
- samtools
- bedtools
- vcftools
- bcftools
- bamtools
- bamUtil
- vcflib
- samstat
- seqtk
- sratools
- bcl2fastq2
- ucsc_utils