Update index.md

xjtu-omics · Aug 5, 2023 · 3be5164 · 3be5164
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Showing 1 changed file with 56 additions and 15 deletions.
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@@ -13,11 +13,22 @@ Currently, it includes _Papaver somniferum_ (opium poppy), _Papaver rhoeas_ (com
       <p><b>Genomic Raw Data</b>: <a href = "https://bigd.big.ac.cn"> at National Genomics Data Center (NGDC)</a></p>
       <p><b>Genome Assembly</b>: <a href = "https://bigd.big.ac.cn/search/?dbId=&q=GWHAZPJ00000000"> GWHAZPJ00000000 </a></p>
       <p><b>Genome Annotation</b>: 
-           <a href = "https://github.com/xjtu-omics/Papaver-Genomics/raw/main/Papaver_somniferum/Papaver_somniferum.gene.bed.tar.gz" download="Papaver_somniferum.gene.bed.tar.gz"> <i>bed</i> </a> &nbsp;&nbsp;&nbsp;
-            <a href = "https://github.com/xjtu-omics/Papaver-Genomics/raw/main/Papaver_somniferum/Papaver_somniferum.gene.gff3.tar.gz" download="Papaver_somniferum.gene.gff3.tar.gz"> <i>gff3</i> </a> &nbsp;&nbsp;&nbsp;
-             <a href = "https://github.com/xjtu-omics/Papaver-Genomics/raw/main/Papaver_somniferum/Papaver_somniferum.cds.tar.gz" download="Papaver_somniferum.cds.tar.gz"> <i>cds</i> </a>  &nbsp;&nbsp;&nbsp;
-        <a href = "https://github.com/xjtu-omics/Papaver-Genomics/raw/main/Papaver_somniferum/Papaver_somniferum.pep.tar.gz" download="Papaver_somniferum.pep.tar.gz"> <i>protein</i> </a> </p> 
-      <p>The <b>2018 version </b> of <i>Papaver somniferum</i> (Opium poppy) <b>genomes assembly </b> can be downloaed from NCBI under accession number <a href = "https://www.ncbi.nlm.nih.gov/genome/12819"> PRJNA435796  </a>, the <b>genome annotation </b> can be downloaed from <a href = "https://drive.google.com/drive/folders/1EbvADcWflXQIuFcAukUs5TVDPfq81YrO"> Google drive </a>, and the <b> raw sequencing data </b> can be downloaed from NCBI under accession number <a href = "https://www.ncbi.nlm.nih.gov/Traces/wgs/PUWZ01"> PUWZ00000000 </a> </p>
+        <a href = "https://drive.google.com/file/d/1J2DGfp_x7l5HRaDSVvVWcRyU_sZhvwEC/view?usp=drive_link" download="Papaver_somniferum.gene.bed.tar.gz"> <i>bed (2023)</i> </a> &nbsp;&nbsp;&nbsp;
+        <a href = "https://drive.google.com/file/d/1qtsXrZMJTcLvNohILSjBSg4MQl6P8NgU/view?usp=drive_link" download="Papaver_somniferum.gene.gff3.tar.gz"> <i>gff3 (2023)</i> </a> &nbsp;&nbsp;&nbsp;
+        <a href = "https://drive.google.com/file/d/1hln5CxyQBc9EUCvGsWlVnxdJoeiTZ62o/view?usp=drive_link" download="Papaver_somniferum.cds.tar.gz"> <i>cds (2023)</i> </a>  &nbsp;&nbsp;&nbsp;
+        <a href = "https://drive.google.com/file/d/1f8yyvQ0Cd9S2fIL_uPhXYwJ7gB6kHOR4/view?usp=drive_link" download="Papaver_somniferum.pep.tar.gz"> <i>protein (2023)</i> </a> </p> 
+
+      <p> The <b>2021 version </b> (published on Nature Communications) of <i>Papaver somniferum</i> <b>genomes assembly </b> can be downloaed from NGDC under accession number <a href = "https://ngdc.cncb.ac.cn/search/?dbId=&q=GWHAZPJ00000000"> GWHAZPJ00000000 (2021) </a>, the <b>genome annotation </b> can be downloaed from  </p>
+      <a href = "https://github.com/xjtu-omics/Papaver-Genomics/raw/main/Papaver_somniferum/Papaver_somniferum.gene.bed.tar.gz" download="Papaver_somniferum.gene.bed.tar.gz"> <i>bed (2021)</i> </a> &nbsp;&nbsp;&nbsp;
+      <a href = "https://github.com/xjtu-omics/Papaver-Genomics/raw/main/Papaver_somniferum/Papaver_somniferum.gene.gff3.tar.gz" download="Papaver_somniferum.gene.gff3.tar.gz"> <i>gff3 (2021)</i> </a> &nbsp;&nbsp;&nbsp;
+      <a href = "https://github.com/xjtu-omics/Papaver-Genomics/raw/main/Papaver_somniferum/Papaver_somniferum.cds.tar.gz" download="Papaver_somniferum.cds.tar.gz"> <i>cds (2021)</i> </a>  &nbsp;&nbsp;&nbsp;
+      <a href = "https://github.com/xjtu-omics/Papaver-Genomics/raw/main/Papaver_somniferum/Papaver_somniferum.pep.tar.gz" download="Papaver_somniferum.pep.tar.gz"> <i>protein (2021)</i> </a> 
+      </p> 
+      
+      <p> The <b>2018 version </b> of <i>Papaver somniferum</i> (Opium poppy) <b>genomes assembly </b> can be downloaed from NCBI under accession number 
+      <a href = "https://www.ncbi.nlm.nih.gov/genome/12819"> PRJNA435796  </a>, the <b>genome annotation </b> can be downloaed from <a href = "https://drive.google.com/drive/folders/1EbvADcWflXQIuFcAukUs5TVDPfq81YrO"> Google drive </a>, 
+      and the <b> raw sequencing data </b> can be downloaed from NCBI under accession number <a href = "https://www.ncbi.nlm.nih.gov/Traces/wgs/PUWZ01"> PUWZ00000000 </a> 
+      </p>
     </td>
     <td width="25%">
       <img src="image/opium_poppy.png" width="100%">
@@ -28,11 +39,18 @@ Currently, it includes _Papaver somniferum_ (opium poppy), _Papaver rhoeas_ (com
     <td width="75%">
       <h1><i>Papaver setigerum</i></h1>
       <p><b>Genomic Raw Data</b>: <a href = "https://bigd.big.ac.cn"> at National Genomics Data Center (NGDC)</a></p>
-      <p><b>Genome Assembly</b>: <a href = "https://bigd.big.ac.cn/search/?dbId=&q=GWHAZPH00000000"> GWHAZPH00000000 </a></p>
-      <p><b>Genome Annotation</b>: <a href = "https://github.com/xjtu-omics/Papaver-Genomics/raw/main/Papaver_setigerum/Papaver_setigerum.gene.bed.tar.gz" download="Papaver_setigerum.gene.bed.tar.gz"> <i>bed</i> </a>  &nbsp;&nbsp;&nbsp;
-       <a href = "https://github.com/xjtu-omics/Papaver-Genomics/raw/main/Papaver_setigerum/Papaver_setigerum.gene.gff3.tar.gz" download="Papaver_setigerum.gene.gff3.tar.gz"> <i>gff3</i> </a>  &nbsp;&nbsp;&nbsp;
-       <a href = "https://github.com/xjtu-omics/Papaver-Genomics/raw/main/Papaver_setigerum/Papaver_setigerum.cds.tar.gz" download="Papaver_setigerum.cds.tar.gz"> <i>cds</i> </a> &nbsp;&nbsp;&nbsp;
-       <a href = "https://github.com/xjtu-omics/Papaver-Genomics/raw/main/Papaver_setigerum/Papaver_setigerum.pep.tar.gz" download="Papaver_setigerum.pep.tar.gz"> <i>protein</i> </a> </p>
+      <p><b>Genome Assembly</b>: <a href = "https://bigd.big.ac.cn/search/?dbId=&q=GWHAZPH00000000"> xxxx </a></p>
+      <p><b>Genome Annotation</b>: 
+        <a href = "https://drive.google.com/file/d/1S5QYg2poXDZNAU554_Fv5eAVK1PaR8iW/view?usp=drive_link" download="Papaver_setigerum.gene.bed.tar.gz"> <i>bed (2023)</i> </a>  &nbsp;&nbsp;&nbsp;
+       <a href = "https://drive.google.com/file/d/14Rl4euosWw086Il3c7fL2LC2_-rvxFgp/view?usp=drive_link" download="Papaver_setigerum.gene.gff3.tar.gz"> <i>gff3 (2023)</i> </a>  &nbsp;&nbsp;&nbsp;
+       <a href = "https://drive.google.com/file/d/1BSq_fZ-Fsk00JTwbfuCPWV80Y32x0pNJ/view?usp=drive_link" download="Papaver_setigerum.cds.tar.gz"> <i>cds (2023)</i> </a> &nbsp;&nbsp;&nbsp;
+       <a href = "https://drive.google.com/file/d/1ZwllkI7VT5lR3bmx755E0pwPrelqQAXP/view?usp=drive_link" download="Papaver_setigerum.pep.tar.gz"> <i>protein (2023)</i> </a> </p>
+      
+      <p>The <b>2021 version </b> (published on Nature communications) of <i>Papaver setigerum</i> <b>genomes assembly </b> can be downloaed from NGDC under accession number <a href = "https://ngdc.cncb.ac.cn/search/?dbId=&q=GWHAZPH00000000"> GWHAZPH00000000 (2021) </a>, the <b>genome annotation </b> can be downloaed from  
+        <a href = "https://github.com/xjtu-omics/Papaver-Genomics/raw/main/Papaver_setigerum/Papaver_setigerum.gene.bed.tar.gz" download="Papaver_setigerum.gene.bed.tar.gz"> <i>bed (2021)</i> </a>  &nbsp;&nbsp;&nbsp;
+        <a href = "https://github.com/xjtu-omics/Papaver-Genomics/raw/main/Papaver_setigerum/Papaver_setigerum.gene.gff3.tar.gz" download="Papaver_setigerum.gene.gff3.tar.gz"> <i>gff3 (2021)</i> </a>  &nbsp;&nbsp;&nbsp;
+       <a href = "https://github.com/xjtu-omics/Papaver-Genomics/raw/main/Papaver_setigerum/Papaver_setigerum.cds.tar.gz" download="Papaver_setigerum.cds.tar.gz"> <i>cds (2021)</i> </a> &nbsp;&nbsp;&nbsp;
+       <a href = "https://github.com/xjtu-omics/Papaver-Genomics/raw/main/Papaver_setigerum/Papaver_setigerum.pep.tar.gz" download="Papaver_setigerum.pep.tar.gz"> <i>protein (2021)</i> </a> </p>
     </td>
     <td width="25%">
       <img src="image/setigerum.png" width="100%">
@@ -42,16 +60,39 @@ Currently, it includes _Papaver somniferum_ (opium poppy), _Papaver rhoeas_ (com
     <td width="75%">
       <h1><i>Papaver rhoeas</i></h1>
       <p><b>Genomic Raw Data</b>: <a href = "https://bigd.big.ac.cn"> at National Genomics Data Center (NGDC)</a></p>
-      <p><b>Genome Assembly</b>: <a href = "https://bigd.big.ac.cn/search/?dbId=&q=GWHAZPI00000000"> GWHAZPI00000000 </a></p>
-      <p><b>Genome Annotation</b>: <a href = "https://github.com/xjtu-omics/Papaver-Genomics/raw/main/Papaver_rhoeas/Papaver_rhoeas.gene.bed.tar.gz" download="Papaver_rhoeas.gene.bed.tar.gz"> <i>bed</i> </a>  &nbsp;&nbsp;&nbsp;
-      <a href = "https://github.com/xjtu-omics/Papaver-Genomics/raw/main/Papaver_rhoeas/Papaver_rhoeas.gene.gff3.tar.gz" download="Papaver_rhoeas.gene.gff3.tar.gz"> <i>gff3</i></a> &nbsp;&nbsp;&nbsp;
-      <a href = "https://github.com/xjtu-omics/Papaver-Genomics/raw/main/Papaver_rhoeas/Papaver_rhoeas.cds.tar.gz" download="Papaver_rhoeas.cds.tar.gz"> <i>cds</i> </a> &nbsp;&nbsp;&nbsp;
-      <a href = "https://github.com/xjtu-omics/Papaver-Genomics/raw/main/Papaver_rhoeas/Papaver_rhoeas.pep.tar.gz" download="Papaver_rhoeas.pep.tar.gz"> <i>protein</i> </a></p>
+      <p><b>Genome Assembly</b>: <a href = "https://bigd.big.ac.cn/search/?dbId=&q=GWHAZPI00000000">  xxxx </a></p>
+      <p><b>Genome Annotation</b>: 
+        <a href = "https://drive.google.com/file/d/1AUFFDpLZKsV96uvDg3hPezWGDTjRrEKk/view?usp=drive_link" download="Papaver_rhoeas.gene.bed.tar.gz"> <i>bed (2023)</i> </a>  &nbsp;&nbsp;&nbsp;
+      <a href = "https://drive.google.com/file/d/1RxkoiwHg4nuQkJDYCkcwyskUiY77Z5ol/view?usp=drive_link" download="Papaver_rhoeas.gene.gff3.tar.gz"> <i>gff3 (2023)</i></a> &nbsp;&nbsp;&nbsp;
+      <a href = "https://drive.google.com/file/d/1BSq_fZ-Fsk00JTwbfuCPWV80Y32x0pNJ/view?usp=drive_link" download="Papaver_rhoeas.cds.tar.gz"> <i>cds (2023)</i> </a> &nbsp;&nbsp;&nbsp;
+      <a href = "https://drive.google.com/file/d/1I08LH79O2ddIuzfw8UeRf1jazgMVwDA4/view?usp=drive_link" download="Papaver_rhoeas.pep.tar.gz"> <i>protein (2023)</i> </a></p>
+      
+      <p>The <b>2021 version </b> (published on Nature communications) of <i>Papaver rhoeas</i> <b>genomes assembly </b> can be downloaed from NGDC under accession number <a href = "https://ngdc.cncb.ac.cn/search/?dbId=&q=GWHAZPI00000000"> GWHAZPI00000000 (2021) </a>, the <b>genome annotation </b> can be downloaed from 
+        <a href = "https://github.com/xjtu-omics/Papaver-Genomics/raw/main/Papaver_rhoeas/Papaver_rhoeas.gene.bed.tar.gz" download="Papaver_rhoeas.gene.bed.tar.gz"> <i>bed (2021)</i> </a>  &nbsp;&nbsp;&nbsp;
+        <a href = "https://github.com/xjtu-omics/Papaver-Genomics/raw/main/Papaver_rhoeas/Papaver_rhoeas.gene.gff3.tar.gz" download="Papaver_rhoeas.gene.gff3.tar.gz"> <i>gff3 (2021) </i></a> &nbsp;&nbsp;&nbsp;
+      <a href = "https://github.com/xjtu-omics/Papaver-Genomics/raw/main/Papaver_rhoeas/Papaver_rhoeas.cds.tar.gz" download="Papaver_rhoeas.cds.tar.gz"> <i>cds (2012) </i> </a> &nbsp;&nbsp;&nbsp;
+      <a href = "https://github.com/xjtu-omics/Papaver-Genomics/raw/main/Papaver_rhoeas/Papaver_rhoeas.pep.tar.gz" download="Papaver_rhoeas.pep.tar.gz"> <i>protein (2021)</i> </a> </p>
+      
     </td>
     <td width="25%">
       <img src="image/rhoeas.png" width="100%">
     </td>
   </tr>
+  <tr>
+    <td width="75%">
+      <h1><i>Papaver bracteatum</i>(HiFi 2023 version) </h1>
+      <p><b>Genomic Raw Data</b>: <a href = "https://bigd.big.ac.cn"> at National Genomics Data Center (NGDC)</a></p>
+      <p><b>Genome Assembly</b>: <a href = "https://bigd.big.ac.cn/search/?dbId=&q=xxx"> xxx </a></p>
+      <p><b>Genome Annotation</b>: 
+      <a href = "https://drive.google.com/file/d/1iO8zCKef-Kgsnd1qdhTqLLqvPUo3t7S0/view?usp=drive_link" download="Papaver_bracteatum.gene.bed.tar.gz"> <i>bed (2023)</i> </a>  &nbsp;&nbsp;&nbsp;
+      <a href = "https://drive.google.com/file/d/1jEgZJ0WBp1u8ChraMZ8y4I41VL3xWbWd/view?usp=drive_link" download="Papaver_bracteatum.gene.gff3.tar.gz"> <i>gff3 (2023)</i></a> &nbsp;&nbsp;&nbsp;
+      <a href = "https://drive.google.com/file/d/14E2Pfiwn4SG8QfqMN4KSROvZ5H-KO6ym/view?usp=drive_link" download="Papaver_bracteatum.cds.tar.gz"> <i>cds (2023)</i> </a> &nbsp;&nbsp;&nbsp;
+      <a href = "https://drive.google.com/file/d/1SA1xtNDCgxLW6k26EH4ZsAcRWSuqOcKZ/view?usp=drive_link" download="Papaver_bracteatum.pep.tar.gz"> <i>protein (2023)</i> </a></p>
+    </td>
+    <td width="25%">
+      <img src="image/Papaver_bracteata_-_Flickr_-_peganum.jpg" width="100%">
+    </td>
+  </tr>
 </table>
 </div>