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SPMLMI

SPMLMI: Predicting lncRNA–miRNA interactions in humans using a structural perturbation method

If you use this tool, please consider citing the following publication: https://doi.org/10.7717/peerj.11426

Data：

  • ML_matrix: Known interaction pairs between miRNAs and lncRNAs.
  • LS: The lncRNA similarity matrix.
  • MS: The miRNA similarity matrix.

Code：

  • main_SPMLMI: The main program of SPLMI.
  • perturbation: The function for computing link predictability of complex networks.

Run steps

  1. Make data preparations. Specify a complete file path and file name.
  2. Run "main_SPMLMI.m" for predicting lncRNA–miRNA interactions.

Supplementary：

  • lncRNA_id: The ids and names for lncRNAs.
  • miRNA_id: The ids and names for miRNAs.
  • Supplementary_Table_S1: Prediction results of the top 120 MALAT1-related miRNAs, and ranked by their prediction scores.