DESCRIPTION

Package: spatialDE
Title: R wrapper for SpatialDE
Date: 2023-03-08
Version: 1.5.5
Authors@R: c(
    person("Davide", "Corso", role = "aut",
           email = "davidecrs92@gmail.com",
           comment = c(ORCID = "0000-0001-8845-3693")),
    person("Milan", "Malfait", role = "aut",
           email = "milan.malfait94@gmail.com",
           comment = c(ORCID = "0000-0001-9144-3701")),
    person("Lambda", "Moses", role = "aut",
           email = "dlu2@caltech.edu",
           comment = c(ORCID = "0000-0002-7092-9427")),
    person("Gabriele", "Sales", role = "cre",
            email = "gabriele.sales@unipd.it"))
Description: SpatialDE is a method to find spatially variable genes (SVG) from
    spatial transcriptomics data. This package provides wrappers to use the
    Python SpatialDE library in R, using reticulate and basilisk.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: FALSE
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
URL: https://github.com/sales-lab/spatialDE, https://bioconductor.org/packages/spatialDE/
BugReports: https://github.com/sales-lab/spatialDE/issues
Depends: R (>= 4.0)
Imports:
    reticulate,
    basilisk (>= 1.9.10),
    checkmate,
    stats,
    SpatialExperiment,
    methods,
    SummarizedExperiment,
    Matrix,
    ggplot2,
    ggrepel,
    scales,
    gridExtra
Suggests:
    knitr,
    BiocStyle,
    rmarkdown,
    testthat (>= 3.0.0)
VignetteBuilder: knitr
biocViews:
    Software,
    Transcriptomics
StagedInstall: no
Config/testthat/edition: 3