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@xzhoulab

Zhou Lab

genetics; genomics

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  1. SPARK SPARK Public

    Spatially resolved transcriptomic analysis

    R 55 17

  2. iDEA iDEA Public

    Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)

    C++ 32 11

  3. DRComparison DRComparison Public

    Comparison of dimensionality reduction methods

    R 30 10

  4. SRTsim SRTsim Public

    R 12 1

  5. SPARK-Analysis SPARK-Analysis Public

    spatially resolved data analysis

    R 10 5

  6. iDEA-Analysis iDEA-Analysis Public

    R 8 2

Repositories

Showing 10 of 21 repositories
  • SRTsim Public
    xzhoulab/SRTsim’s past year of commit activity
    R 12 GPL-3.0 1 8 0 Updated Sep 24, 2024
  • spatialDE-1 Public Forked from sales-lab/spatialDE

    R wrapper for SpatialDE

    xzhoulab/spatialDE-1’s past year of commit activity
    R 0 3 0 0 Updated Jun 20, 2023
  • nnSVG Public Forked from lmweber/nnSVG

    nnSVG: scalable method to identify spatially variable genes (SVGs) in spatially-resolved transcriptomics data

    xzhoulab/nnSVG’s past year of commit activity
    R 0 MIT 9 0 0 Updated Jun 20, 2023
  • SRTsim-Analysis Public
    xzhoulab/SRTsim-Analysis’s past year of commit activity
    R 2 0 0 0 Updated Dec 23, 2022
  • SPARK Public

    Spatially resolved transcriptomic analysis

    xzhoulab/SPARK’s past year of commit activity
    R 55 GPL-3.0 17 10 1 Updated Nov 17, 2022
  • iDEA Public

    Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)

    xzhoulab/iDEA’s past year of commit activity
    C++ 32 GPL-3.0 11 7 0 Updated Oct 6, 2022
  • SpatialPCA Public Forked from shangll123/SpatialPCA

    Spatially aware dimension reduction for spatial transcriptomics.

    xzhoulab/SpatialPCA’s past year of commit activity
    R 0 10 0 0 Updated Aug 20, 2022
  • BASS Public Forked from zhengli09/BASS

    Bayesian Analytics for Spatial Segmentation

    xzhoulab/BASS’s past year of commit activity
    C++ 0 GPL-3.0 7 0 0 Updated Aug 10, 2022
  • PQLseq Public Forked from cran/PQLseq

    ❗ This is a read-only mirror of the CRAN R package repository. PQLseq — Efficient Mixed Model Analysis of Count Data in Large-Scale Genomic Sequencing Studies

    xzhoulab/PQLseq’s past year of commit activity
    R 1 6 0 0 Updated Jun 22, 2022
  • SPARK-X-Analysis Public
    xzhoulab/SPARK-X-Analysis’s past year of commit activity
    HTML 2 0 3 0 Updated Jun 10, 2022
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