y0-causal-inference · cthoyt · Jan 26, 2024 · Oct 27, 2023 · Oct 30, 2023 · Nov 1, 2023
diff --git a/docs/source/img/EColi_original.pdf b/docs/source/img/EColi_original.pdf
diff --git a/docs/source/img/EColi_simplified.pdf b/docs/source/img/EColi_simplified.pdf
diff --git a/img/SARS_COV.png b/img/SARS_COV.png
diff --git a/img/Sars_ATE_boxplot.png b/img/Sars_ATE_boxplot.png
diff --git a/img/Tsignaling.png b/img/Tsignaling.png
diff --git a/img/ecoli.png b/img/ecoli.png
diff --git a/notebooks/Case_study1_The_Sars_cov2_model.ipynb b/notebooks/Case_study1_The_Sars_cov2_model.ipynb
diff --git a/notebooks/Case_study2_The_Tsignaling_pathway.ipynb b/notebooks/Case_study2_The_Tsignaling_pathway.ipynb
diff --git a/notebooks/Case_study3_The_EColi.ipynb b/notebooks/Case_study3_The_EColi.ipynb
diff --git a/notebooks/motivating_example.ipynb b/notebooks/motivating_example.ipynb
diff --git a/src/eliater/__init__.py b/src/eliater/__init__.py
@@ -5,10 +5,26 @@
 from .api import workflow
 from .discover_latent_nodes import remove_nuisance_variables
 from .network_validation import add_ci_undirected_edges, plot_ci_size_dependence
+from .version import get_version
 
 __all__ = [
     "workflow",
     "remove_nuisance_variables",
     "add_ci_undirected_edges",
     "plot_ci_size_dependence",
 ]
+
+
+def version_df():
+    import datetime
+
+    import pandas
+
+    import y0.version
+
+    rows = [
+        ("eliater", get_version(with_git_hash=True)),
+        ("y0", y0.version.get_version(with_git_hash=True)),
+        ("Run at", datetime.datetime.now().strftime("%Y-%m-%d %H:%M:%S")),
+    ]
+    return pandas.DataFrame(rows, columns=["key", "value"])
diff --git a/src/eliater/data/EColi_obs_data.csv b/src/eliater/data/EColi_obs_data.csv
diff --git a/src/eliater/data/__init__.py b/src/eliater/data/__init__.py
@@ -0,0 +1,22 @@
+from pathlib import Path
+
+import pandas as pd
+
+__all__ = [
+    "load_sachs_df",
+    "load_ecoli_obs",
+]
+
+HERE = Path(__file__).parent.resolve()
+SACHS_PATH = HERE.joinpath("sachs_discretized_2bin.csv")
+ECOLI_OBS_PATH = HERE.joinpath("EColi_obs_data.csv")
+
+
+def load_sachs_df() -> pd.DataFrame:
+    return pd.read_csv(SACHS_PATH, index_col=0)
+
+
+def load_ecoli_obs() -> pd.DataFrame:
+    return pd.read_csv(ECOLI_OBS_PATH)
+
+
diff --git a/src/eliater/data/cd3cd28+g0076.xls b/src/eliater/data/cd3cd28+g0076.xls
diff --git a/src/eliater/data/cd3cd28.xls b/src/eliater/data/cd3cd28.xls