PatternCode

PatternCode is a Python tool for design of optimal labeling patterns for optical genome mapping via information theory. See the paper for details.

Reproducing the figures from the paper

Assuming anaconda python 3.10 is installed:

python -m venv .venv
source .venv/bin/activate
pip install -r requirements.txt
jupyter notebook ./paper_figures.ipynb

Usage example in jupyter notebook: example.ipynb

jupyter notebook ./example.ipynb