tvbtools: A Signal Processing Toolbox for neural data analysis

tvbtools is a comprehensive toolbox for signal analysis. The main functions of the tvbtools include but not limited to:

Signaltoolbox module:

simulated LFPs analysis:

1. Data reader. support txt, csv, xlsx, mat, HDF5 and more.
2. Filtering. SOS filter and FIR filter.
3. Spikes count function.
4. Power spectral density.
5. Multiple amplitude extraction stractegies.
6. Time lagging calculation.
7. Phase locking value calculation.
8. Phase-Amplitude coupling (cross frequency analysis)

Statoolbox module:

1. Permutation test
2. Max-T method (multiple comparison correction of the permutation test)
3. Contrast analysis of ANOVA
4. Automatically add asterisks to data table
5. Bootstrap test

Other functionalities

This toolbox also provides TheVirtualBrain simulation template, meta-connectivity (dFC) calculation template and graph theory metrics calculate demo.

Links

Other repo related to tvbtools

tvbdemos: Demos of my workflow here

brain-dynamics-toolbox: graph theory and biophysics models here

network-science-toolbox: a useful toolbox for meta-connectivity calculation: here

tvb-ukbb: fMRI preprocessing pipeline based on UKBIOBANK pipeline here