Releases: yutanagano/sceptr
Releases · yutanagano/sceptr
v1.1.0
New Features
- Implement method for accessing residue-level representations by @yutanagano in #30
Other Changes
- Fix bug in docs landing page figure legend text by @yutanagano in #26
- Update branding by @yutanagano in #27
- Update README.md by @yutanagano in #28
- Improve docs by @yutanagano in #31
- Simplify docstrings by @andim in #32
- Clarify single chain models in docs by @yutanagano in #33
New Contributors
Full Changelog: v1.0.1...v1.1.0
v1.1.0-beta.1
What's Changed
- Fix bug in docs landing page figure legend text by @yutanagano in #26
- Update branding by @yutanagano in #27
- Update README.md by @yutanagano in #28
- Bump version by @yutanagano in #29
- Implement method for accessing residue-level representations by @yutanagano in #30
- Improve docs by @yutanagano in #31
Full Changelog: v1.0.1...v1.1.0-beta.1
v1.0.1
Minor patch to add links to the preprint on arxiv.org to the README and documentation.
v1.0.0
First production release! 🥳 Thank you to everyone who has helped with the project.
What's Changed
- Add latest model versions by @yutanagano in #19
- Make docs by @yutanagano in #20
- Improve docs by @yutanagano in #21
- Move functional api to top by @yutanagano in #22
- Add publication figures by @yutanagano in #23
- Prepare for first stable release by @yutanagano in #24
Full Changelog: v1.0.0-beta.1...v1.0.0
v1.0.0-beta.1
What's Changed
- Rename classic variant to left-aligned by @yutanagano in #11
- Update SCEPTR name acronym from ...Peptide... to ...Primary... by @yutanagano in #12
- Polish documentation by @yutanagano in #13
- Bump libtcrlm dependency to v1.0.0 by @yutanagano in #14
- Polish pyproject TOML by @yutanagano in #15
- Add github workflows by @yutanagano in #16
- Prepare for first beta release by @yutanagano in #17
Full Changelog: v1.0.0-alpha.4...v1.0.0-beta.1
v1.0.0-alpha.4
What's Changed
- Add finetuned model by @yutanagano in #4
- Rename models by @yutanagano in #5
- Add new OLGA variant by @yutanagano in #6
- Add more variants by @yutanagano in #7
- Add unpaired variant by @yutanagano in #8
- Add dropout noise only variant by @yutanagano in #9
- rename variants according to changes in paper draft by @yutanagano in #10
Full Changelog: v1.0.0-alpha.3...v1.0.0-alpha.4
v1.0.0-alpha.3
What's Changed
⚠️ BREAKING CHANGE: thexlarge
variant is no longer tracked and published as it was unnecessarily large, unwieldy, and was no better than its smaller counterparts making it not a very interesting variant- New variants added (classic variants, they use learnable initial token embeddings and a traditional sinusoidal positional information embedding method)
Full Changelog: v1.0.0-alpha.2...v1.0.0-alpha.3
v1.0.0-alpha.2
What's Changed
- Add new variants by @yutanagano in #2
- Track
libtcrlm
dependency version with explicit git commit hash to mitigate pip version conflict resolution issues
Full Changelog: v1.0.0-alpha.1...v1.0.0-alpha.2
v1.0.0-alpha.1
What's Changed
- Library code is now outsourced to a separate private repository
libtcrlm
. This means installing the newest version ofsceptr
requires access to this second private repo. If you would like access, please notify @yutanagano. - New variants
- single chain models
- larger paired-chain variant
- extra large CDR3-only, MLM-only variant
- BLOSUM embedding variant (the initial embedding to the transformer uses BLOSUM amino acid encodings)
Full Changelog: https://github.com/yutanagano/sceptr/commits/v1.0.0-alpha.1