Intercellular-Communications-and-Multilayer-GRN-of-EMT

Walkthrough: Mouse skin squamous cell carcinoma (SCC dataset): This dataset of 382 cells on skin tumors contains FACS_isolated epithelial YFP+Epcam+ tumor cells, which are relatively homogeneous, and mesenchymal-like YFP+Epcam- tumor cells, which are more heterogeneous.

Usage: For matlab codes, download the source codes and unzip the MATLAB package. Change the current directory in MATLAB to the folder containing the scripts.

1. QuanTC: clustering and transition trajectory reconstruction.
2. PIDC: using partial information decomposition to identify GRN code
3. SoptSC: qualitatively characterizing cell-cell communications code
4. Multilayer regulations of EMT code
5. igraph: measuring node centrality code