Installation

dependencies

• python3
• cwltool pip install cwlref-runner
• docker (alternatively, you can use udocker, singularity, or --no-container mode when you have no root privileges. See Tips section.)
• STAR requires about 37Gb RAM.

Install

VIRTUS

1. install cwltool

pip install cwlref-runner

In detail, check out the cwltool website.

2. Setup docker

Setup docker. If you are using Mac, increase the memory limit above 40Gb(Documentation).

3. Clone VIRTUS.

git clone https://github.com/yyoshiaki/VIRTUS

You can add ./VIRTUS/bin to PATH in .zshrc or .bashrc etc.

4. Version confirmation

Tool --help will tell you the version. ex. VIRTUS.PE.cwl --help

VIRTUS wrapper

VIRTUS wrapper uses Python3 and several packages. To manage python and packages, anaconda is useful.

1. install Python packages

pip install numpy pandas scipy statsmodels seaborn

just it.