Update config.catchem and exglobal_stage_ic.sh

parm/config/gfs/config.catchem

@@ -46,7 +46,7 @@ export dust_alpha_catc="${dust_alpha_catc:-0.04}"
 export dust_gamma_catc="${dust_gamma_catc:-1.0}"
 export seas_emis_scale="${seas_emis_scale:-"1.,1.,1.,1.,1."}"
 # Large scale wet deposition option
-export wetdep_ls_cplchp =${wetdep_ls_cplchp:-"1"}
+export wetdep_ls_cplchp="${wetdep_ls_cplchp:-1}"
 
 #
 # Numbe rof diagnostic aerosol tracers (default: 0)

parm/post/postxconfig-NT-CCPP-CHEM-F00.txt

@@ -1 +1 @@
-/scratch2/BMC/gsd-fv3-dev/lzhang/UFS-dev/global-workflow-s2s/sorc/upp.fd/parm/postxconfig-NT-CCPP-CHEM-F00.txt
+/home/Kate.Zhang/fv1/UFS-dev/global-workflow/sorc/upp.fd/parm/postxconfig-NT-CCPP-CHEM-F00.txt

parm/post/postxconfig-NT-CCPP-CHEM.txt

@@ -1 +1 @@
-/scratch2/BMC/gsd-fv3-dev/lzhang/UFS-dev/global-workflow-s2s/sorc/upp.fd/parm/postxconfig-NT-CCPP-CHEM.txt
+/home/Kate.Zhang/fv1/UFS-dev/global-workflow/sorc/upp.fd/parm/postxconfig-NT-CCPP-CHEM.txt

scripts/exglobal_stage_ic.sh

@@ -0,0 +1,91 @@
+#!/usr/bin/env bash
+
+source "${HOMEgfs}/ush/preamble.sh"
+
+# Locally scoped variables and functions
+# shellcheck disable=SC2153
+GDATE=$(date --utc -d "${PDY} ${cyc} - ${assim_freq} hours" +%Y%m%d%H)
+gPDY="${GDATE:0:8}"
+gcyc="${GDATE:8:2}"
+
+MEMDIR_ARRAY=()
+if [[ "${RUN:-}" = "gefs" ]]; then
+  # Populate the member_dirs array based on the value of NMEM_ENS
+  for ((ii = 0; ii <= "${NMEM_ENS:-0}"; ii++)); do
+    MEMDIR_ARRAY+=("mem$(printf "%03d" "${ii}")")
+  done
+else
+  MEMDIR_ARRAY+=("")
+fi
+
+# Initialize return code
+err=0
+
+error_message() {
+  echo "FATAL ERROR: Unable to copy ${1} to ${2} (Error code ${3})"
+}
+
+###############################################################
+for MEMDIR in "${MEMDIR_ARRAY[@]}"; do
+
+  # Stage atmosphere initial conditions to ROTDIR
+  if [[ ${EXP_WARM_START:-".false."} = ".true." ]]; then
+    # Stage the FV3 restarts to ROTDIR (warm start)
+    RUN=${rCDUMP} YMD=${gPDY} HH=${gcyc} generate_com COM_ATMOS_RESTART_PREV:COM_ATMOS_RESTART_TMPL
+    [[ ! -d "${COM_ATMOS_RESTART_PREV}" ]] && mkdir -p "${COM_ATMOS_RESTART_PREV}"
+    for ftype in coupler.res fv_core.res.nc; do
+      src="${BASE_CPLIC}/${CPL_ATMIC:-}/${PDY}${cyc}/${MEMDIR}/atmos/${PDY}.${cyc}0000.${ftype}"
+      tgt="${COM_ATMOS_RESTART_PREV}/${PDY}.${cyc}0000.${ftype}"
+      ${NCP} "${src}" "${tgt}"
+      rc=$?
+      ((rc != 0)) && error_message "${src}" "${tgt}" "${rc}"
+      err=$((err + rc))
+    done
+    for ftype in ca_data fv_core.res fv_srf_wnd.res fv_tracer.res phy_data sfc_data; do
+      for ((tt = 1; tt <= 6; tt++)); do
+        src="${BASE_CPLIC}/${CPL_ATMIC:-}/${PDY}${cyc}/${MEMDIR}/atmos/${PDY}.${cyc}0000.${ftype}.tile${tt}.nc"
+        tgt="${COM_ATMOS_RESTART_PREV}/${PDY}.${cyc}0000.${ftype}.tile${tt}.nc"
+        ${NCP} "${src}" "${tgt}"
+        rc=$?
+        ((rc != 0)) && error_message "${src}" "${tgt}" "${rc}"
+        err=$((err + rc))
+      done
+    done
+  else
+    # Stage the FV3 cold-start initial conditions to ROTDIR
+    YMD=${PDY} HH=${cyc} generate_com COM_ATMOS_INPUT
+    [[ ! -d "${COM_ATMOS_INPUT}" ]] && mkdir -p "${COM_ATMOS_INPUT}"
+    src="$ICSORG/${CDUMP}.${PDY}/${cyc}/atmos/INPUT/gfs_ctrl.nc"
+    #src="${BASE_CPLIC}/${CPL_ATMIC:-}/${PDY}${cyc}/${MEMDIR}/atmos/gfs_ctrl.nc"
+    tgt="${COM_ATMOS_INPUT}/gfs_ctrl.nc"
+    ${NCP} "${src}" "${tgt}"
+    rc=$?
+    ((rc != 0)) && error_message "${src}" "${tgt}" "${rc}"
+    err=$((err + rc))
+    for ftype in gfs_data sfc_data; do
+      for ((tt = 1; tt <= 6; tt++)); do
+        src="$ICSORG/${CDUMP}.${PDY}/${cyc}/atmos/INPUT/${ftype}.tile${tt}.nc"
+        #src="${BASE_CPLIC}/${CPL_ATMIC:-}/${PDY}${cyc}/${MEMDIR}/atmos/${ftype}.tile${tt}.nc"
+        tgt="${COM_ATMOS_INPUT}/${ftype}.tile${tt}.nc"
+        ${NCP} "${src}" "${tgt}"
+        rc=$?
+        ((rc != 0)) && error_message "${src}" "${tgt}" "${rc}"
+        err=$((err + rc))
+      done
+    done
+
+ fi
+
+
+done # for MEMDIR in "${MEMDIR_ARRAY[@]}"; do
+
+###############################################################
+# Check for errors and exit if any of the above failed
+if [[ "${err}" -ne 0 ]]; then
+  echo "FATAL ERROR: Unable to copy ICs from ${BASE_CPLIC} to ${ROTDIR}; ABORT!"
+  exit "${err}"
+fi
+
+##############################################################
+# Exit cleanly
+exit "${err}"