Integrating automated acoustic vocalization data and point count surveys for estimation of bird abundance

Methods in Ecology and Evolution

Jeffrey W. Doser, Andrew O. Finley, Aaron S. Weed, Elise F. Zipkin

Code/Data DOI:

Please contact the first author for questions about the code or data: Jeffrey W. Doser (doserjef@msu.edu)

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Abstract:

1. Monitoring wildlife abundance across space and time is an essential task to study their population dynamics and inform effective management. Acoustic recording units are a promising technology for efficiently monitoring bird populations and communities. While current acoustic data models provide information on the presence/absence of individual species, new approaches are needed to monitor population abundance, ideally across large spatio‐temporal regions.
2. We present an integrated modelling framework that combines high‐quality but temporally sparse bird point count survey data with acoustic recordings. Our models account for imperfect detection in both data types and false positive errors in the acoustic data. Using simulations, we compare the accuracy and precision of abundance estimates using differing amounts of acoustic vocalizations obtained from a clustering algorithm, point count data, and a subset of manually validated acoustic vocalizations. We also use our modelling framework in a case study to estimate abundance of the Eastern Wood‐Pewee (Contopus virens) in Vermont, USA.
3. The simulation study reveals that combining acoustic and point count data via an integrated model improves accuracy and precision of abundance estimates compared with models informed by either acoustic or point count data alone. Improved estimates are obtained across a wide range of scenarios, with the largest gains occurring when detection probability for the point count data is low. Combining acoustic data with only a small number of point count surveys yields estimates of abundance without the need for validating any of the identified vocalizations from the acoustic data. Within our case study, the integrated models provided moderate support for a decline of the Eastern Wood‐Pewee in this region.
4. Our integrated modelling approach combines dense acoustic data with few point count surveys to deliver reliable estimates of species abundance without the need for manual identification of acoustic vocalizations or a prohibitively expensive large number of repeated point count surveys. Our proposed approach offers an efficient monitoring alternative for large spatio‐temporal regions when point count data are difficult to obtain or when monitoring is focused on rare species with low detection probability.

Repository Directory

Published PDF

simulations

Contains code for running all four models, code for running simulation study, and code for summarizing simulation results and producing figures.

EAWP

Contains code for running all four models with the Eastern Wood-Pewee case study.

Data

See the following subdirectories for data and metadata: EAWP

Code

See the following subdirectories for code and metadata: EAWP, simulations