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rc/2.13.5 #2309

Merged
merged 352 commits into from
Jul 27, 2022
Merged

rc/2.13.5 #2309

merged 352 commits into from
Jul 27, 2022

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morriscb
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CLAassistant commented Feb 23, 2022

CLA assistant check
Thank you for your submission! We really appreciate it. Like many open source projects, we ask that you all sign our Contributor License Agreement before we can accept your contribution.
2 out of 3 committers have signed the CLA.

✅ aamster
✅ danielsf
❌ Christopher B. Morrison


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aamster and others added 29 commits April 25, 2022 17:25
Removes unnecessary validation on non-behavior files
because we are interested in what the mouse was seeing when it licked,
we need to include monitor_delay in the frame_times used to
find lick_frames
…rom nwb will start at 0 and will be different
…alignment

Makes sure timestamps and eye tracking frames are aligned
…since it is an id internal to LIMS;

Adds ability to strip subregion from acronym
Removes dependency on hardcoded acronym-id map and strips subregion from acronym
Fixes issue with nan manual_structure_acronym
…tion_link

Update further documentation link
These methods are going to be useful for the VBN metadata.
- move functions for getting behavior -> session_utils
- move VBN utils into internal/api/queries where appropriate
aamster added 25 commits July 6, 2022 13:39
reads session type from pkl file instead of from mtrain
adds left_right_ccf_coordinate to project level units table
…nto rc/2.13.5

# Conflicts:
#	allensdk/brain_observatory/ecephys/write_nwb/__main__.py
#	allensdk/test/brain_observatory/ecephys/test_write_nwb.py
Adds support for VBN trials table having different name for 'change_time'
rename autorewarded to auto_rewarded in rewards table
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@aamster aamster merged commit 17d4beb into master Jul 27, 2022
@aamster aamster deleted the rc/2.13.5 branch July 27, 2022 12:19
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5 participants