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chore: fix 8-letter codes for dirs #48

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merged 4 commits into from
Jun 27, 2023
Merged

chore: fix 8-letter codes for dirs #48

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5777ba3
5to8
AngryMaciek Jun 27, 2023
65e6864
Update notebook.ipynb
AngryMaciek Jun 27, 2023
1d9e393
md5
AngryMaciek Jun 27, 2023
64f310d
clean all
AngryMaciek Jun 27, 2023
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1 change: 1 addition & 0 deletions .github/workflows/test.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -44,6 +44,7 @@ jobs:
run: |
conda info -a
conda list
conda clean --all --yes

- name: Install md5sum (macOS)
shell: bash -l {0}
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18 changes: 9 additions & 9 deletions notebook.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -171,21 +171,21 @@
"library('demonanalysis')\n",
"\n",
"plot_all_images(\n",
" path=\"tests/binder/output/simulations/00000\",\n",
" path=\"tests/binder/output/simulations/00000000\",\n",
" output_filename=\"summary\",\n",
" output_dir=\"tests/binder/output/simulations/00000\"\n",
" output_dir=\"tests/binder/output/simulations/00000000\"\n",
")\n",
"\n",
"plot_all_images(\n",
" path=\"tests/binder/output/simulations/00001\",\n",
" path=\"tests/binder/output/simulations/00000001\",\n",
" output_filename=\"summary\",\n",
" output_dir=\"tests/binder/output/simulations/00001\"\n",
" output_dir=\"tests/binder/output/simulations/00000001\"\n",
")\n",
"\n",
"plot_all_images(\n",
" path=\"tests/binder/output/simulations/00002\",\n",
" path=\"tests/binder/output/simulations/00000002\",\n",
" output_filename=\"summary\",\n",
" output_dir=\"tests/binder/output/simulations/00002\"\n",
" output_dir=\"tests/binder/output/simulations/00000002\"\n",
")"
]
},
Expand All @@ -212,7 +212,7 @@
"metadata": {},
"outputs": [],
"source": [
"Image(filename=\"tests/binder/output/simulations/00000/summary.png\") "
"Image(filename=\"tests/binder/output/simulations/00000000/summary.png\") "
]
},
{
Expand All @@ -230,7 +230,7 @@
"metadata": {},
"outputs": [],
"source": [
"Image(filename=\"tests/binder/output/simulations/00001/summary.png\") "
"Image(filename=\"tests/binder/output/simulations/00000001/summary.png\") "
]
},
{
Expand All @@ -248,7 +248,7 @@
"metadata": {},
"outputs": [],
"source": [
"Image(filename=\"tests/binder/output/simulations/00002/summary.png\") "
"Image(filename=\"tests/binder/output/simulations/00000002/summary.png\") "
]
},
{
Expand Down
50 changes: 25 additions & 25 deletions tests/test1/output-Ubuntu.md5
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Original file line number Diff line number Diff line change
@@ -1,25 +1,25 @@
9cb23bf8486dd60ccac89181a787fc8a output/simulations/00000/sample_size_log.dat
da17e4b19227a290066c62ee301e2bb8 output/simulations/00000/output_genotype_properties.dat
7344c4eaf9c7d93e52842cbaa038d6aa output/simulations/00000/parameters.dat
03df6d5b05ae7340543f235b59d871a6 output/simulations/00000/demes.dat
9284e022aece10e3c094d3c4e62b8824 output/simulations/00000/driver_phylo.dat
680469cc977bf2df5439e21be353f7f9 output/simulations/00000/output_normalcellsgrid.dat
ad04ba3d5fe30441638d8604eef76197 output/simulations/00000/output_birthratesgrid.dat
975d6257ea7f14e35b5dc701e44444af output/simulations/00000/output_driver_allele_counts.dat
ecda078d3fdeadce153b03d8caab89ec output/simulations/00000/output_migrationratesgrid.dat
f1f16323b1d001d7f11a1180db2846ca output/simulations/00000/output.dat
d41d8cd98f00b204e9800998ecf8427e output/simulations/00000/matrix.dat
908b1842ad34dc969cb94cd3b91d4868 output/simulations/00000/clones.dat
009735b0a512228fac4b1384373ff0b4 output/simulations/00000/output_deathrates_grid.dat
d41d8cd98f00b204e9800998ecf8427e output/simulations/00000/.snakemake_timestamp
01ea9f533e85b5465da57d04a0ff6c92 output/simulations/00000/phylo.dat
b676b1f51cb17f68b7fc03b2a9d19158 output/simulations/00000/output_popgrid.dat
f0e8e53bac7ebd957cab5702ce70386e output/simulations/00000/output_diversities.dat
c7e3f1a01b061015228d89dfa5e09770 output/simulations/00000/output_driver_genotype_counts.dat
d41d8cd98f00b204e9800998ecf8427e output/simulations/00000/driver_matrix.dat
dd495074cc537594e8d5e572e3735258 output/simulations/00000/output_driversgrid.dat
4775497e0032971b72a132f94e9f45a1 output/simulations/00000/output_allele_counts.dat
6c4a3d41423fa1e69d57bd55aaac95c9 output/simulations/00000/config.dat
88cc374ca6f4e537360a19622dc192b6 output/simulations/00000/output_passengersgrid.dat
8e83666903ac43728f002de51744a822 output/simulations/00000/output_driver_genotype_properties.dat
32f38f430097e325405121252c8cf52e output/simulations/00000/output_genotype_counts.dat
9cb23bf8486dd60ccac89181a787fc8a output/simulations/00000000/sample_size_log.dat
da17e4b19227a290066c62ee301e2bb8 output/simulations/00000000/output_genotype_properties.dat
7344c4eaf9c7d93e52842cbaa038d6aa output/simulations/00000000/parameters.dat
03df6d5b05ae7340543f235b59d871a6 output/simulations/00000000/demes.dat
9284e022aece10e3c094d3c4e62b8824 output/simulations/00000000/driver_phylo.dat
680469cc977bf2df5439e21be353f7f9 output/simulations/00000000/output_normalcellsgrid.dat
ad04ba3d5fe30441638d8604eef76197 output/simulations/00000000/output_birthratesgrid.dat
975d6257ea7f14e35b5dc701e44444af output/simulations/00000000/output_driver_allele_counts.dat
ecda078d3fdeadce153b03d8caab89ec output/simulations/00000000/output_migrationratesgrid.dat
f1f16323b1d001d7f11a1180db2846ca output/simulations/00000000/output.dat
d41d8cd98f00b204e9800998ecf8427e output/simulations/00000000/matrix.dat
908b1842ad34dc969cb94cd3b91d4868 output/simulations/00000000/clones.dat
009735b0a512228fac4b1384373ff0b4 output/simulations/00000000/output_deathrates_grid.dat
d41d8cd98f00b204e9800998ecf8427e output/simulations/00000000/.snakemake_timestamp
01ea9f533e85b5465da57d04a0ff6c92 output/simulations/00000000/phylo.dat
b676b1f51cb17f68b7fc03b2a9d19158 output/simulations/00000000/output_popgrid.dat
f0e8e53bac7ebd957cab5702ce70386e output/simulations/00000000/output_diversities.dat
c7e3f1a01b061015228d89dfa5e09770 output/simulations/00000000/output_driver_genotype_counts.dat
d41d8cd98f00b204e9800998ecf8427e output/simulations/00000000/driver_matrix.dat
dd495074cc537594e8d5e572e3735258 output/simulations/00000000/output_driversgrid.dat
4775497e0032971b72a132f94e9f45a1 output/simulations/00000000/output_allele_counts.dat
6c4a3d41423fa1e69d57bd55aaac95c9 output/simulations/00000000/config.dat
88cc374ca6f4e537360a19622dc192b6 output/simulations/00000000/output_passengersgrid.dat
8e83666903ac43728f002de51744a822 output/simulations/00000000/output_driver_genotype_properties.dat
32f38f430097e325405121252c8cf52e output/simulations/00000000/output_genotype_counts.dat
50 changes: 25 additions & 25 deletions tests/test1/output-macOS.md5
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Original file line number Diff line number Diff line change
@@ -1,25 +1,25 @@
ad04ba3d5fe30441638d8604eef76197 output/simulations/00000/output_birthratesgrid.dat
01ea9f533e85b5465da57d04a0ff6c92 output/simulations/00000/phylo.dat
d41d8cd98f00b204e9800998ecf8427e output/simulations/00000/driver_matrix.dat
9cb23bf8486dd60ccac89181a787fc8a output/simulations/00000/sample_size_log.dat
ecda078d3fdeadce153b03d8caab89ec output/simulations/00000/output_migrationratesgrid.dat
8f8d5659d9dec029b1ddaba26e64d0be output/simulations/00000/output_driver_genotype_properties.dat
6c4a3d41423fa1e69d57bd55aaac95c9 output/simulations/00000/config.dat
03df6d5b05ae7340543f235b59d871a6 output/simulations/00000/demes.dat
d41d8cd98f00b204e9800998ecf8427e output/simulations/00000/matrix.dat
49f01be8cd88ff11cde315af851b3960 output/simulations/00000/output_genotype_properties.dat
908b1842ad34dc969cb94cd3b91d4868 output/simulations/00000/clones.dat
88cc374ca6f4e537360a19622dc192b6 output/simulations/00000/output_passengersgrid.dat
975d6257ea7f14e35b5dc701e44444af output/simulations/00000/output_driver_allele_counts.dat
f1f16323b1d001d7f11a1180db2846ca output/simulations/00000/output.dat
c7e3f1a01b061015228d89dfa5e09770 output/simulations/00000/output_driver_genotype_counts.dat
b676b1f51cb17f68b7fc03b2a9d19158 output/simulations/00000/output_popgrid.dat
680469cc977bf2df5439e21be353f7f9 output/simulations/00000/output_normalcellsgrid.dat
f0e8e53bac7ebd957cab5702ce70386e output/simulations/00000/output_diversities.dat
4775497e0032971b72a132f94e9f45a1 output/simulations/00000/output_allele_counts.dat
009735b0a512228fac4b1384373ff0b4 output/simulations/00000/output_deathrates_grid.dat
52c09203281f472638fca95ec15dc253 output/simulations/00000/driver_phylo.dat
d41d8cd98f00b204e9800998ecf8427e output/simulations/00000/.snakemake_timestamp
dd495074cc537594e8d5e572e3735258 output/simulations/00000/output_driversgrid.dat
32f38f430097e325405121252c8cf52e output/simulations/00000/output_genotype_counts.dat
7344c4eaf9c7d93e52842cbaa038d6aa output/simulations/00000/parameters.dat
ad04ba3d5fe30441638d8604eef76197 output/simulations/00000000/output_birthratesgrid.dat
01ea9f533e85b5465da57d04a0ff6c92 output/simulations/00000000/phylo.dat
d41d8cd98f00b204e9800998ecf8427e output/simulations/00000000/driver_matrix.dat
9cb23bf8486dd60ccac89181a787fc8a output/simulations/00000000/sample_size_log.dat
ecda078d3fdeadce153b03d8caab89ec output/simulations/00000000/output_migrationratesgrid.dat
8f8d5659d9dec029b1ddaba26e64d0be output/simulations/00000000/output_driver_genotype_properties.dat
6c4a3d41423fa1e69d57bd55aaac95c9 output/simulations/00000000/config.dat
03df6d5b05ae7340543f235b59d871a6 output/simulations/00000000/demes.dat
d41d8cd98f00b204e9800998ecf8427e output/simulations/00000000/matrix.dat
49f01be8cd88ff11cde315af851b3960 output/simulations/00000000/output_genotype_properties.dat
908b1842ad34dc969cb94cd3b91d4868 output/simulations/00000000/clones.dat
88cc374ca6f4e537360a19622dc192b6 output/simulations/00000000/output_passengersgrid.dat
975d6257ea7f14e35b5dc701e44444af output/simulations/00000000/output_driver_allele_counts.dat
f1f16323b1d001d7f11a1180db2846ca output/simulations/00000000/output.dat
c7e3f1a01b061015228d89dfa5e09770 output/simulations/00000000/output_driver_genotype_counts.dat
b676b1f51cb17f68b7fc03b2a9d19158 output/simulations/00000000/output_popgrid.dat
680469cc977bf2df5439e21be353f7f9 output/simulations/00000000/output_normalcellsgrid.dat
f0e8e53bac7ebd957cab5702ce70386e output/simulations/00000000/output_diversities.dat
4775497e0032971b72a132f94e9f45a1 output/simulations/00000000/output_allele_counts.dat
009735b0a512228fac4b1384373ff0b4 output/simulations/00000000/output_deathrates_grid.dat
52c09203281f472638fca95ec15dc253 output/simulations/00000000/driver_phylo.dat
d41d8cd98f00b204e9800998ecf8427e output/simulations/00000000/.snakemake_timestamp
dd495074cc537594e8d5e572e3735258 output/simulations/00000000/output_driversgrid.dat
32f38f430097e325405121252c8cf52e output/simulations/00000000/output_genotype_counts.dat
7344c4eaf9c7d93e52842cbaa038d6aa output/simulations/00000000/parameters.dat
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