add trace log for debug #20
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| # This starter workflow is for a CMake project running on multiple platforms. There is a different starter workflow if you just want a single platform. | |
| # See: https://github.com/actions/starter-workflows/blob/main/ci/cmake-single-platform.yml | |
| name: CMake on multiple platforms | |
| on: | |
| push: | |
| branches: [ "master", "dev" ] | |
| pull_request: | |
| branches: [ "master" ] | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| # Set fail-fast to false to ensure that feedback is delivered for all matrix combinations. Consider changing this to true when your workflow is stable. | |
| fail-fast: false | |
| # Set up a matrix to run the following 3 configurations: | |
| # 1. <Windows, Release, latest MSVC compiler toolchain on the default runner image, default generator> | |
| # 2. <Linux, Release, latest GCC compiler toolchain on the default runner image, default generator> | |
| # 3. <Linux, Release, latest Clang compiler toolchain on the default runner image, default generator> | |
| # | |
| # To add more build types (Release, Debug, RelWithDebInfo, etc.) customize the build_type list. | |
| matrix: | |
| os: [ubuntu-latest,macos-latest ] # , windows-latest] | |
| build_type: [Release] | |
| c_compiler: [gcc, clang] # clang, cl] | |
| include: | |
| # - os: windows-latest | |
| # c_compiler: cl | |
| # cpp_compiler: cl | |
| - os: ubuntu-latest | |
| c_compiler: gcc | |
| cpp_compiler: g++ | |
| - os: ubuntu-latest | |
| c_compiler: clang | |
| cpp_compiler: clang++ | |
| - os: macos-latest | |
| c_compiler: gcc | |
| cpp_compiler: g++ | |
| - os: macos-latest | |
| c_compiler: clang | |
| cpp_compiler: clang++ | |
| # - os: macos-latest-xlarge | |
| # c_compiler: gcc | |
| # cpp_compiler: g++ | |
| # - os: macos-latest-xlarge | |
| # c_compiler: clang | |
| # cpp_compiler: clang++ | |
| exclude: | |
| - os: windows-latest | |
| c_compiler: gcc | |
| - os: windows-latest | |
| c_compiler: clang | |
| - os: ubuntu-latest | |
| c_compiler: cl | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set reusable strings | |
| # Turn repeated input strings (such as the build output directory) into step outputs. These step outputs can be used throughout the workflow file. | |
| id: strings | |
| shell: bash | |
| run: | | |
| echo "build-output-dir=${{ github.workspace }}/build" >> "$GITHUB_OUTPUT" | |
| ## Install htslib and run only in ubuntu-latest | |
| - name : Install htslib libgsl ubuntu | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libhts-dev libgsl-dev | |
| ## Install htslib on macOS and run only in macos-latest or macos-latest-xlarge | |
| - name : Install htslib gsl macOS | |
| if: matrix.os == 'macos-latest' || matrix.os == 'macos-latest-xlarge' | |
| run: | | |
| brew install htslib | |
| brew install gsl | |
| # - name : Install gsl macOS | |
| # if: matrix.os == 'macos-latest' || matrix.os == 'macos-latest-xlarge' | |
| # run : | | |
| # mkdir -p tmp/gsl | |
| # curl -o tmp/gsl-2.2.tar.gz ftp://ftp.gnu.org/gnu/gsl/gsl-2.2.tar.gz -LOk | |
| # tar -zxvf tmp/gsl-2.2.tar.gz -C tmp/gsl | |
| # rm tmp/gsl-2.2.tar.gz | |
| # cd tmp/gsl/gsl-2.2 | |
| # ./configure | |
| # make | |
| # sudo make install | |
| - name: Configure CMake | |
| # Configure CMake in a 'build' subdirectory. `CMAKE_BUILD_TYPE` is only required if you are using a single-configuration generator such as make. | |
| # See https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html?highlight=cmake_build_type | |
| run: > | |
| cmake -B ${{ steps.strings.outputs.build-output-dir }} | |
| -DCMAKE_CXX_COMPILER=${{ matrix.cpp_compiler }} | |
| -DCMAKE_C_COMPILER=${{ matrix.c_compiler }} | |
| -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} | |
| -S ${{ github.workspace }} | |
| - name: Build | |
| # Build your program with the given configuration. Note that --config is needed because the default Windows generator is a multi-config generator (Visual Studio generator). | |
| run: cmake --build ${{ steps.strings.outputs.build-output-dir }} --config ${{ matrix.build_type }} | |
| ## make release | |
| - name: Create release tarball | |
| run: | | |
| cd ${{ steps.strings.outputs.build-output-dir }} | |
| cpack -G TGZ | |
| - name: Upload release tarball | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| # Name of the artifact. This is the name that will be displayed in the GitHub Actions UI. | |
| # get the name of the release tarball | |
| name: mstatspop-release | |
| path: | | |
| ${{ steps.strings.outputs.build-output-dir }}/*.tar.gz | |
| ${{ steps.strings.outputs.build-output-dir }}/version.txt | |
| - name: check release tarball | |
| run : ls -l ${{ steps.strings.outputs.build-output-dir }}/*.tar.gz | |
| - name: check release tarball 2 | |
| run: ls -l ${{ steps.strings.outputs.build-output-dir }}/ | |
| - name: Test | |
| working-directory: ${{ steps.strings.outputs.build-output-dir }} | |
| # Execute tests defined by the CMake configuration. Note that --build-config is needed because the default Windows generator is a multi-config generator (Visual Studio generator). | |
| # See https://cmake.org/cmake/help/latest/manual/ctest.1.html for more detail | |
| run: ctest --build-config ${{ matrix.build_type }} | |
| release: | |
| runs-on: ubuntu-latest | |
| ## only run when build job is successful | |
| needs: build | |
| ## only run on master branch | |
| if: github.ref == 'refs/heads/master' | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Download release tarball | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: mstatspop-release | |
| path: ${{ github.workspace }}/mstatspop-release | |
| - name: check release tarball | |
| run: ls -l ${{ github.workspace }}/mstatspop-release/ | |
| - name: version | |
| run: | | |
| echo "version=$(cat version.txt)" >> "$GITHUB_ENV" | |
| echo "version=$(cat version.txt)" >> "$GITHUB_OUTPUT" | |
| id: version | |
| - name: release | |
| uses: actions/create-release@v1 | |
| id: create_release | |
| with: | |
| draft: true | |
| prerelease: false | |
| release_name: v${{ steps.version.outputs.version }} | |
| tag_name: v${{ steps.version.outputs.version }} | |
| body_path: CHANGELOG.md | |
| commitish: ${{ github.sha }} | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| - name: upload linux artifact | |
| uses: actions/upload-release-asset@v1 | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| with: | |
| upload_url: ${{ steps.create_release.outputs.upload_url }} | |
| asset_path: ${{ github.workspace }}/mstatspop-release/mstatspop-${{ steps.version.outputs.version }}-Linux.tar.gz | |
| # asset_path: ${{ steps.strings.outputs.build-output-dir }}/*.Linux.tar.gz | |
| asset_name: mstatspop-v${{ steps.version.outputs.version }}-Linux.tar.gz | |
| asset_content_type: application/gzip | |
| - name: upload macos artifact | |
| uses: actions/upload-release-asset@v1 | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| with: | |
| upload_url: ${{ steps.create_release.outputs.upload_url }} | |
| asset_path: ${{ github.workspace }}/mstatspop-release/mstatspop-${{ steps.version.outputs.version }}-Darwin.tar.gz | |
| asset_name: mstatspop-v${{ steps.version.outputs.version }}-Darwin.tar.gz | |
| asset_content_type: application/gzip |