Revert "fix threads to index"

This reverts commit 55c7ee5.
Clinical-Genomics · Nov 20, 2023 · 682ffcf · 682ffcf
1 parent 1e5ac64
commit 682ffcf
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/BALSAMIC/snakemake_rules/align/sentieon_alignment.rule b/BALSAMIC/snakemake_rules/align/sentieon_alignment.rule
@@ -107,7 +107,7 @@ rule samtools_sort_index:
     shell:
         """
 samtools sort --threads {threads} -o {output.bam} {input.bam};
-samtools index -@ {threads} {output.bam};
+samtools index --threads {threads} {output.bam};
         """