fix: ascatngs container #1155
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fix: ascatngs container #1155
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Codecov ReportPatch and project coverage have no change.
Additional details and impacted files@@ Coverage Diff @@
## develop #1155 +/- ##
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Coverage 99.31% 99.31%
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Files 29 29
Lines 1756 1756
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Hits 1744 1744
Misses 12 12
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ivadym
approved these changes
May 8, 2023
ivadym
reviewed
May 8, 2023
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Kudos, SonarCloud Quality Gate passed!
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Great job! Thanks for the fix! : ) |
ivadym
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May 10, 2023
### Added: * PIP specific missing tools to config #1096 * Filtering script to remove normal variants from TIDDIT #1120 * Store TMB files in HK #1144 ### Changed: * Fixed all conda container dependencies #1096 * Changed --max_sv_size in VEP params to the size of chr1 for hg19 #1124 * Increased time-limit for sambamba_exon_depth and picard_markduplicates to 6 hours #1143 * Update cosmicdb to v97 #1147 * Updated read the docs with the changes relevant to mention #1153 ### Fixed: * Update cryptography version (39.0.1) due to security alert #1087 * Bump cryptography to v40.0.2 and gsutil to v5.23 #1154 * Pytest file saved in balsamic directory #1093 * Fix varcall_py3 container bcftools dependency error #1097 * AscatNgs container #1155
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This PR:
Fixed: ascatNgs docker container replacing the container build from submodule to the Docker recipe, fixing dependencies and versions of the required tools.
Review and tests: