Code

refactor: Update QC criteria#952

Code

Merged

ivadym merged 27 commits intodevelopClinical-Genomics/BALSAMIC:developfrom update-qc-criteriaClinical-Genomics/BALSAMIC:update-qc-criteriaCopy head branch name to clipboardJun 17, 2022

+384-515

Commits

Commits on Jun 10, 2022

• remove unused files

  ivadym

  committed
  13545af

  Copy full SHA for 13545af

• changelog

  ivadym

  committed
  1117cc2

  Copy full SHA for 1117cc2

• merge develop

  ivadym

  committed
  ae00ba7

  Copy full SHA for ae00ba7

Commits on Jun 15, 2022

• update panel metrics

  ivadym

  committed
  811cf0b

  Copy full SHA for 811cf0b

• update number of variants threshold

  ivadym

  committed
  8f844f9

  Copy full SHA for 8f844f9

• Merge branch 'develop' of github.com:Clinical-Genomics/BALSAMIC into update-qc-criteria

  ivadym

  committed
  6d17ec1

  Copy full SHA for 6d17ec1

• update pytests

  ivadym

  committed
  d8f5e48

  Copy full SHA for d8f5e48

Commits on Jun 16, 2022

• add WGS tumor/normal specific conditions

  ivadym

  committed
  92ad148

  Copy full SHA for 92ad148

• add model pytest

  ivadym

  committed
  b91c77c

  Copy full SHA for b91c77c

• merge develop

  ivadym

  committed
  2b46ca1

  Copy full SHA for 2b46ca1

• add pytest conditon pct

  ivadym

  committed
  4167d17

  Copy full SHA for 4167d17

• add pytests cli/rules

  ivadym

  committed
  9771969

  Copy full SHA for 9771969

• remove duplicate method

  ivadym

  committed
  0a8b7b7

  Copy full SHA for 0a8b7b7

• test codefactor

  ivadym

  committed
  0f8eba7

  Copy full SHA for 0f8eba7

• create io utils file

  ivadym

  committed
  bee3905

  Copy full SHA for bee3905

• remove unused method

  ivadym

  committed
  0a6fc19

  Copy full SHA for 0a6fc19

• update io methods

  ivadym

  committed
  64dec1e

  Copy full SHA for 64dec1e

• update error treatment json file

  ivadym

  committed
  9768101

  Copy full SHA for 9768101

Commits on Jun 17, 2022

• add comments

  ivadym

  committed
  ca64ca3

  Copy full SHA for ca64ca3

• typo

  ivadym

  committed
  6321cc8

  Copy full SHA for 6321cc8

• merge develop

  ivadym

  committed
  118eb16

  Copy full SHA for 118eb16

• update changelog

  ivadym

  committed
  7a78f8d

  Copy full SHA for 7a78f8d

• fix run validate command

  ivadym

  committed
  4ec1ee8

  Copy full SHA for 4ec1ee8

• changelog

  ivadym

  committed
  430354a

  Copy full SHA for 430354a

• eof

  ivadym

  committed
  b38567d

  Copy full SHA for b38567d

• add workflow flag to script

  ivadym

  committed
  7599449

  Copy full SHA for 7599449

• typo

  ivadym

  committed
  9937b1c

  Copy full SHA for 9937b1c