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Solving ensembles, and move tests to simulation-integration #148

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merged 28 commits into from
Dec 8, 2023
Merged

Solving ensembles, and move tests to simulation-integration #148

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a586a02
tests
jClugstor Nov 20, 2023
a26fd63
add ensemble weight solving
jClugstor Nov 6, 2023
61a0cde
add different sir examples
jClugstor Nov 6, 2023
3abd993
added dummy callbacks for ens calibrate/simulate
jClugstor Nov 8, 2023
f017be7
tests for server routes, data for ensemble calib
jClugstor Nov 8, 2023
16b2d7b
fix tests
jClugstor Nov 8, 2023
7a65d7d
Configuration
jClugstor Nov 27, 2023
237be2d
Change tests to use simulation-integration
jClugstor Nov 28, 2023
f3afb05
fix stuff
jClugstor Nov 29, 2023
ef75211
JSON3 read and write
jClugstor Nov 29, 2023
a07c634
add option to use urls for testing
jClugstor Nov 29, 2023
0411fb6
If not using TDS, no ask for the things using TDS
jClugstor Nov 29, 2023
2ee42f3
lotsa changes
jClugstor Dec 1, 2023
8ae6437
placeholder test for calibrate-ensemble route
jClugstor Dec 4, 2023
157fd6c
fix test changes
jClugstor Dec 4, 2023
ab82d7e
delete scratch
jClugstor Dec 5, 2023
32c1a64
match data with state only if state is in data (#147)
jClugstor Dec 4, 2023
d4987e0
delete file
jClugstor Dec 5, 2023
a12cbc0
scrap examples
jClugstor Dec 5, 2023
2c13cb0
Merge branch 'main' into test_fixes
jClugstor Dec 5, 2023
67ce271
update
jClugstor Dec 6, 2023
56e5fa6
change docker_precompile
jClugstor Dec 6, 2023
4f82c10
change precompile
jClugstor Dec 6, 2023
f1074a0
add configuration
jClugstor Dec 6, 2023
d57fbc8
simplify ensemble simulate solve, use sol_mappings
jClugstor Dec 7, 2023
b99f480
test fixes
jClugstor Dec 7, 2023
40545e5
stop printing intermediate results to logs
jClugstor Dec 8, 2023
bba2222
get tests to work
jClugstor Dec 8, 2023
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264 changes: 130 additions & 134 deletions Manifest.toml
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3 changes: 2 additions & 1 deletion docker/docker_precompile.jl
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Original file line number Diff line number Diff line change
@@ -1,4 +1,5 @@
using SimulationService
import ModelingToolkit: ODESystem
import JSON3
SimulationService.amr_get(JSON3.read(joinpath(@__DIR__, "examples", "calibrate_example1", "BIOMD0000000955_askenet.json")), ODESystem)
import HTTP
SimulationService.amr_get(JSON3.read(HTTP.get("https://raw.githubusercontent.com/DARPA-ASKEM/simulation-integration/main/data/models/sidarthe.json").body).configuration, ODESystem)
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