Open the VCF file manually when running sample check as pysam fails sometime #209
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nitin-ebi
approved these changes
May 30, 2024
apriltuesday
approved these changes
May 30, 2024
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I'm guessing this is a more complete solution to EVA-3361, which I think was just one way I observed pysam failing.
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This small PR is meant to avoid failures when reading VCF files directly from the python code