Update LTP Database

It is now possible to update the LTP database via the gtdb_migration_tk CLI

First download the files of interest from the LTP Website.

Download the files:

• $\lt$ prefix $\gt$.csv
• $\lt$ prefix $\gt$ _aligned.fasta
• $\lt$ prefix $\gt$ _blastdb.fasta
• $\lt$ prefix $\gt$ _compressed.fasta

Then run the following command in the directory where those files are

gtdb_migration_tk generate_ltp_db --csv LTP_01_2022.csv --blastdb LTP_01_2022_blastdb.fasta --fasta LTP_01_2022_compressed.fasta -p LTP_01_2022 -o .