Merge pull request #133 from FertigLab/filtered-bc-mat

filtered instead of raw
FertigLab · Dec 5, 2024 · 5595e8c · 5595e8c
2 parents 8a21f28 + bbcddbf
commit 5595e8c
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/nextflow/main.nf b/nextflow/main.nf
@@ -87,7 +87,7 @@ process PREPROCESS {
   """
   mkdir "${prefix}"
 
-  Rscript -e 'res <- Seurat::Read10X("$data/raw_feature_bc_matrix/");
+  Rscript -e 'res <- Seurat::Read10X("$data/filtered_feature_bc_matrix/");
               res <- Seurat::NormalizeData(res);
               saveRDS(res, file="${prefix}/dgCMatrix.rds")';