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Merge doxygen2 into develop #553

Merged
merged 102 commits into from
Apr 26, 2021
Merged

Merge doxygen2 into develop #553

merged 102 commits into from
Apr 26, 2021

Commits on Feb 6, 2021

  1. Fixed warnings and started H5Epublic.h.

    @gheber
    gheber committed Feb 6, 2021
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  2. Include H5FD* headers to correctly resolve references.

    @gheber
    gheber committed Feb 6, 2021
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Commits on Feb 12, 2021

  1. Doxygen2 (#330) 

    * H5Eauto_is_v2.

* Added a few more calls.

* Added a few more H5E calls.

* First cut of H5E v2.

* Added the deprecated v1 calls.

* Updated spacing.

* Once more.
    @gheber
    gheber authored Feb 12, 2021
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Commits on Feb 19, 2021

  1. Taking some inspiration from Eigen3.

    @gheber
    gheber committed Feb 19, 2021
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  2. Add doxygen for the assigned functions: H5Pregister1,H5Pinsert1,H5Pen… ( 

    #352)

* Add doxygen for the assigned functions: H5Pregister1,H5Pinsert1,H5Pencode1, H5Pget_filter_by_id1,H5Pget_version, H5Pset_file_space,H5Pget_file_space. Someone already adds H5Pget_filter1. Also fixs an extra parameter 'close' call back function for HPregister2.

* doxygen work. fixs format by using clang-format.

* doxgen work for H5Pregister1 etc. Addressed Barbara and Gerd's comments.
For Quincey's comments, since we are not supposed to change the source code.
I leave this to future improvements.
    @kyang2014
    kyang2014 authored Feb 19, 2021
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  3. added documentation for H5P APIs (#350) 

    * add documenation for H5Pget_buffer,H5Pget_data_transform,H5Pget_edc_check,H5Pget_hyper_vector_size,H5Pget_preserve,H5Pget_type_conv_cb,H5Pget_vlen_mem_manager,H5Pset_btree_ratios

* format corrections

* fixed grammer

* fixed herr_t
    @brtnfld
    brtnfld authored Feb 19, 2021
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  4. Better name.

    @gheber
    gheber committed Feb 19, 2021
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  5. Merge remote-tracking branch 'upstream/doxygen2' into doxygen2

    @gheber
    gheber committed Feb 19, 2021
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  6. A fresh look.

    @gheber
    gheber committed Feb 19, 2021
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Commits on Feb 24, 2021

  1. add doxygen to H5Ppublic.h

    Kimmy Mu committed Feb 24, 2021
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  2. use attention instead of warning

    Kimmy Mu committed Feb 24, 2021
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Commits on Feb 25, 2021

  1. Add doxygen comments in H5Ppublic.h (#375) 

    * Add doxygen comments in H5Ppublic.h

* H5Pset_meta_block_size
* H5Pset_metadata_read_attempts
* H5Pset_multi_type
* H5Pset_object_flush_cb
* H5Pset_sieve_buf_size
* H5Pset_small_data_block_size
* H5Pset_all_coll_metadata_ops
* H5Pget_all_coll_metadata_ops

* Add DOXYGEN_EXAMPLES_DIR to src/CMakeLists.txt

* Fix clang-format errors

* Fix filenames in doxygen/examples
    @ChristopherHogan
    ChristopherHogan authored Feb 25, 2021
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  2. add doxygen to H5Ppublic.h (#378) 

    * add doxygen to H5Ppublic.h

* use attention instead of warning

Co-authored-by: Kimmy Mu <kmu@hdfgroup.org>
    @jya-kmu
    jya-kmu and Kimmy Mu authored Feb 25, 2021
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Commits on Feb 26, 2021

  1. Revert "add doxygen to H5Ppublic.h (#378)" 

    This reverts commit 2ee1821.
    @gheber
    gheber authored Feb 26, 2021
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  2. Merge pull request #387 from HDFGroup/revert-378-doxygen2 

    Revert "add doxygen to H5Ppublic.h"
    @gheber
    gheber authored Feb 26, 2021
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  3. Updated Doxygen variables.

    @gheber
    gheber committed Feb 26, 2021
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  4. Merge remote-tracking branch 'upstream/doxygen2' into doxygen21

    @gheber
    gheber committed Feb 26, 2021
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Commits on Mar 1, 2021

  1. I forgot to copy two images.

    @gheber
    gheber committed Mar 1, 2021
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  2. Enable desktop search by default.

    @gheber
    gheber committed Mar 1, 2021
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  3. Add my assigned Doxygen documentation.

    @gnuoyd
    gnuoyd committed Mar 1, 2021
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  4. Remove whitespace at EOL. Appease clang-format.

    @gnuoyd
    gnuoyd committed Mar 1, 2021
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  5. Addressed Chris' comments.

    @gheber
    gheber committed Mar 1, 2021
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  6. Added an alias for asynchronous functions.

    @gheber
    gheber committed Mar 1, 2021
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  7. One space is enough for all of us.

    @gheber
    gheber committed Mar 1, 2021
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Commits on Mar 2, 2021

  1. Slightly restructured RM page.

    @gheber
    gheber committed Mar 2, 2021
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  2. address some issues

    Kimmy Mu committed Mar 2, 2021
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Commits on Mar 3, 2021

  1. reformatting

    Kimmy Mu committed Mar 3, 2021
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  2. Style external links.

    @gheber
    gheber committed Mar 3, 2021
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Commits on Mar 4, 2021

  1. reformatting

    Kimmy Mu committed Mar 4, 2021
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  2. reformatting

    Kimmy Mu committed Mar 4, 2021
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  3. Added "Metadata Caching in HDF5" as a technical note example.

    @gheber
    gheber committed Mar 4, 2021
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  4. Revise this soon!

    @gheber
    gheber committed Mar 4, 2021
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  5. Added specification examples.

    @gheber
    gheber committed Mar 4, 2021
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  6. Fixed references.

    @gheber
    gheber committed Mar 4, 2021
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Commits on Mar 5, 2021

  1. Merge pull request #402 from gheber/doxygen2 

    A fresh look for  our dox
    @gheber
    gheber authored Mar 5, 2021
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  2. Merge pull request #415 from jya-kmu/doxygen2 

    Doxygen2
    @jya-kmu
    jya-kmu authored Mar 5, 2021
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  3. Added H5AC cache image stuff and file format study.

    @gheber
    gheber committed Mar 5, 2021
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Commits on Mar 6, 2021

  1. Added older FMT versions. Where did 1.0 go?

    @gheber
    gheber committed Mar 6, 2021
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Commits on Mar 8, 2021

  1. Updated C/C++ note and replaced ambiguous labels.

    @gheber
    gheber committed Mar 8, 2021
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Commits on Mar 11, 2021

  1. Reformat source with clang v10.0.1.

    @lrknox
    lrknox committed Mar 11, 2021
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  2. Added the VFL technical note.

    @gheber
    gheber committed Mar 11, 2021
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  3. Added what I believe might be called version 1.0 of the format.

    @gheber
    gheber committed Mar 11, 2021
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Commits on Mar 12, 2021

  1. Added the remaining specs.

    @gheber
    gheber committed Mar 12, 2021
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  2. Added H5Z callback documentation and fixed a few mistakes.

    @gheber
    gheber committed Mar 12, 2021
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  3. Merge pull request #407 from gnuoyd/doxygen2 

    Add my assigned Doxygen documentation.
    @gheber
    gheber authored Mar 12, 2021
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  4. Merge remote-tracking branch 'upstream/doxygen2' into doxygen2

    @gheber
    gheber committed Mar 12, 2021
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Commits on Apr 5, 2021

  1. Added dox for deprecated H5G calls and fixed a few snippet blockIDs.

    @gheber
    gheber committed Apr 5, 2021
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  2. clang-format happy?

    @gheber
    gheber committed Apr 5, 2021
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  3. Ok?

    @gheber
    gheber committed Apr 5, 2021
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Commits on Apr 6, 2021

  1. Bonus track: Deprecated H5D functions.

    @gheber
    gheber committed Apr 6, 2021
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  2. Carry over the more detailed group description.

    @gheber
    gheber committed Apr 6, 2021
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  3. Added documentation for the missing and deprecated H5R calls.

    @gheber
    gheber committed Apr 6, 2021
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  4. Life is easier and less repetitive w/ snippets. Use them!

    @gheber
    gheber committed Apr 6, 2021
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Commits on Apr 8, 2021

  1. Eliminate the snippet block ID artifacts in the HTML rendering.

    @gheber
    gheber committed Apr 8, 2021
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Commits on Apr 9, 2021

  1. Fixed snippet HTML artifacts and added a few missing calls.

    @gheber
    gheber committed Apr 9, 2021
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  2. Under 20 H5Ps to go!

    @gheber
    gheber committed Apr 9, 2021
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  3. Almost complete!

    @gheber
    gheber committed Apr 9, 2021
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  4. "This is a form of pedantry up with which I will not put." (Churchill)

    @gheber
    gheber committed Apr 9, 2021
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Commits on Apr 10, 2021

  1. Let's not waste as much space on bulleted lists!

    @gheber
    gheber committed Apr 10, 2021
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  2. Merge pull request #542 from gheber/doxygen2 

    Added documentation for the deprecated H5G calls.
    @gheber
    gheber authored Apr 10, 2021
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Commits on Apr 12, 2021

  1. First complete (?) draft of the Doxygen-based RM.

    @gheber
    gheber committed Apr 12, 2021
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  2. Completeness check and minor fixes along the way.

    @gheber
    gheber committed Apr 12, 2021
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  3. Pedantry.

    @gheber
    gheber committed Apr 12, 2021
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  4. Adding missing H5FD calls checkpoint.

    @gheber
    gheber committed Apr 12, 2021
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  5. Pedantry.

    @gheber
    gheber committed Apr 12, 2021
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  6. More pedantry.

    @gheber
    gheber committed Apr 12, 2021
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  7. Added H5Pset_fapl_log.

    @gheber
    gheber committed Apr 12, 2021
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Commits on Apr 13, 2021

  1. First draft of H5ES.

    @gheber
    gheber committed Apr 13, 2021
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  2. Fixed warnings.

    @gheber
    gheber committed Apr 13, 2021
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  3. Prep. for map module.

    @gheber
    gheber committed Apr 13, 2021
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  4. First cut of the map module.

    @gheber
    gheber committed Apr 13, 2021
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  5. Pedantry.

    @gheber
    gheber committed Apr 13, 2021
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Commits on Apr 15, 2021

  1. Possible H5F introduction.

    @gheber
    gheber committed Apr 15, 2021
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  2. Fix the indentation.

    @gheber
    gheber committed Apr 15, 2021
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  3. Pedantry.

    @gheber
    gheber committed Apr 15, 2021
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  4. Ditto.

    @gheber
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  5. Thanks to the reviewers for their comments.

    @gheber
    gheber committed Apr 15, 2021
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Commits on Apr 16, 2021

  1. Added missing images.

    @gheber
    gheber committed Apr 16, 2021
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  2. Line numbers are a distraction here.

    @gheber
    gheber committed Apr 16, 2021
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  3. More examples, references, and clean-up. Don't repeat yourself!

    @gheber
    gheber committed Apr 16, 2021
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  4. Clang pedantry.

    @gheber
    gheber committed Apr 16, 2021
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  5. Ditto.

    @gheber
    gheber committed Apr 16, 2021
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  6. More reviewer comments...

    @gheber
    gheber committed Apr 16, 2021
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  7. Templatized references and cleaned up \todos.

    @gheber
    gheber committed Apr 16, 2021
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  8. Merge pull request #550 from gheber/doxygen2 

    VFDs, maps, event sets. Done 4 now. Maybe it's time to get this into `develop`?
    @gheber
    gheber authored Apr 16, 2021
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Commits on Apr 19, 2021

  1. Merge remote-tracking branch 'origin/develop' into doxygen2

    @gheber
    gheber committed Apr 19, 2021
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  2. Committing clang-format changes

    @github-actions
    github-actions[bot] committed Apr 19, 2021
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  3. Fixed MANIFEST.

    @gheber
    gheber committed Apr 19, 2021
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  4. Merge branch 'doxygen2' of github.com:gheber/hdf5 into doxygen2

    @gheber
    gheber committed Apr 19, 2021
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  5. Addressed Quincey's comments. (OCPLs)

    @gheber
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Commits on Apr 22, 2021

  1. Fixed a few more \todo items.

    @gheber
    gheber committed Apr 22, 2021
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  2. Fixed more \todo items.

    @gheber
    gheber committed Apr 22, 2021
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  3. Added attribute life cycle.

    @gheber
    gheber committed Apr 22, 2021
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  4. Forgot the examples file.

    @gheber
    gheber committed Apr 22, 2021
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  5. Committing clang-format changes

    @github-actions
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  6. Pedantry.

    @gheber
    gheber committed Apr 22, 2021
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  7. Merge branch 'doxygen2' of github.com:gheber/hdf5 into doxygen2

    @gheber
    gheber committed Apr 22, 2021
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  8. Live and learn!

    @gheber
    gheber committed Apr 22, 2021
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Commits on Apr 23, 2021

  1. Added a sample H5D life cycle.

    @gheber
    gheber committed Apr 23, 2021
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  2. Committing clang-format changes

    @github-actions
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  3. Pedantry.

    @gheber
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Commits on Apr 26, 2021

  1. Merge branch 'doxygen2' of github.com:gheber/hdf5 into doxygen2

    @gheber
    gheber committed Apr 26, 2021
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