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Integration testing
Integration testing
Sync'ing the importation.R script with what works in prod
…age adjusted or non age adjusted hosp function
…osp script. Minor fixes to ensure backwards compatibility
Dataseed medic
Fix broken tests, though I recommend we eliminate the mean/var checks
Fix bug when the places are also a number for USA runs
SEIR and hospitalization phases have more standardized file format
Rename data/ to sample_data/
Standardize file format of seir, hospitalization files
This reverts commit 521dd25.
Co-authored-by: hrmeredith12 <hrmeredith12@gmail.com>
* fix unit test code * fix unit test for real * fix unit tests * adding ability to filter geoids in relative heatmap function * adding template for county-specific report for a given state * lower tolerance for distribution tests * planning_models chunk * planning scenario chunk * add names to dev team Co-authored-by: eclee25 <eclee25@gmail.com> Co-authored-by: Kyra Grantz <kyragrantz@gmail.com> Co-authored-by: hrmeredith12 <hrmeredith12@gmail.com>
Co-authored-by: hrmeredith12 <hrmeredith12@gmail.com> Co-authored-by: Elizabeth Lee <eclee25@gmail.com>
* Adding Javier * Adding commute data back in * rm fixed param and comment out bad plot * commit namesapce report gen * fix NVentCurr name * formatting changes to county report template, removing defaults that should be modified for each report * adding references for county report template * change importation seeding * table formatting * limitations chunk considering age specific hosp calculations * removing build_hospdeath_geoid_par - old version not used in hosprun.R * removing legacy hospitalization scripts. everything runs through hosp_run.R now * using current default durations to minimize confusion Co-authored-by: hrmeredith12 <hrmeredith12@gmail.com> Co-authored-by: Elizabeth Lee <eclee25@gmail.com> Co-authored-by: Kyra Grantz <kyragrantz@gmail.com>
…to be truthful. (#219)
* Fixed the low in followup issue * Adding initial ^
Co-authored-by: jkamins7 <jkaminsky@jhu.edu>
* Fix load-bearing typo * pretty sure it's supposed to be this Co-authored-by: Josh Wills <jwills@apache.org> Co-authored-by: kkintaro <katkintaro@gmail.com>
* rm date filter in check model script * extra parens
Dataseed - just the commits
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