Bump CSL to 1.1.1 to fix libgomp bug #53643
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I presume this is for #53363? Did you verify this does fix that issue? Is there any self-contained test we can add? Perhaps not, if we don't want to require an external C compiler? |
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I'm not sure how could we test this. The way to trigger is that you need a binary built without fpic and then load libgomp on it with dlopen + RTLD_DEEPBIND. |
topolarity
added
the
backport 1.10
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Yeah probably not worth a dedicated test, but I've verified this works locally: Python 3.11.0rc1 (main, Aug 12 2022, 10:02:14) [GCC 11.2.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import ctypes, os
>>> ctypes.CDLL("./usr/lib/libgomp.so", os.RTLD_DEEPBIND)
<CDLL './usr/lib/libgomp.so', handle 1e38d00 at 0x7f1160f6b0d0>versus with the released 1.10.1 (and also 1.10.2): Python 3.11.0rc1 (main, Aug 12 2022, 10:02:14) [GCC 11.2.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import ctypes, os
>>> ctypes.CDLL(os.path.expanduser("~/.julia/juliaup/julia-1.10.1+0.x64.linux.gnu/lib/julia/libgomp.so"), os.RTLD_DEEPBIND)
[1] 191934 segmentation fault python3.11 |
topolarity
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Mar 8, 2024
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Would you mind explaining why this fixes the issue? |
See JuliaPackaging/Yggdrasil#8205 and links therein. |
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Can this be merged, or, what is currently needed? Would also be nice to backport to 1.10.1 if possible as this broke some downstream builds. |
Let's wait for the tests to finish?
It had been already labelled for backporting to 1.10 (of course not v1.10.1, since it's already out, as is 1.10.2) |
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The test x86_64-linux-gnuassertrr-net job has been systematically timing out on this PR after multiple retries, but on Slack it was mentioned this is likely unrelated to this PR, maybe related to #53657. This should be good to go now. |
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Backported PRs: - [x] #39071 <!-- Add a lazy `logrange` function and `LogRange` type --> - [x] #51802 <!-- Allow AnnotatedStrings in log messages --> - [x] #53369 <!-- Orthogonalize re-indexing for FastSubArrays --> - [x] #48050 <!-- improve `--heap-size-hint` arg handling --> - [x] #53482 <!-- add IR encoding for EnterNode --> - [x] #53499 <!-- Avoid compiler warning about redefining jl_globalref_t --> - [x] #53507 <!-- update staled `Core.Compiler.Effects` documentation --> - [x] #53408 <!-- task splitting: change additive accumulation to multiplicative --> - [x] #53523 <!-- add back an alias for `check_top_bit` --> - [x] #53377 <!-- add _readdirx for returning more object info gathered during dir scan --> - [x] #53525 <!-- fix InteractiveUtils call in Base.runtests on failure --> - [x] #53540 <!-- use more efficient `_readdirx` for tab completion --> - [x] #53545 <!-- use `_readdirx` for `walkdir` --> - [x] #53551 <!-- revert "Add @create_log_macro for making custom styled logging macros (#52196)" --> - [x] #53554 <!-- Always return a value in 1-d circshift! of abstractarray.jl --> - [x] #53424 <!-- yet more atomics & cache-line fixes on work-stealing queue --> - [x] #53571 <!-- Update Documenter to v1.3 for inventory writing --> - [x] #53403 <!-- Move parallel precompilation to Base --> - [x] #53589 <!-- add back `unsafe_convert` to pointer for arrays --> - [x] #53596 <!-- build: remove extra .a file --> - [x] #53606 <!-- fix error path in `precompilepkgs` --> - [x] #53004 <!-- Unexport with, at_with, and ScopedValue from Base --> - [x] #53629 <!-- typo fix in scoped values docs --> - [x] #53630 <!-- sroa: Fix incorrect scope counting --> - [x] #53598 <!-- Use Base parallel precompilation to build stdlibs --> - [x] #53649 <!-- precompilepkgs: package in boths deps and weakdeps are in fact only weak --> - [x] #53671 <!-- Fix bootstrap Base precompile in cross compile configuration --> - [x] #52125 <!-- Load Pkg if not already to reinstate missing package add prompt --> - [x] #53602 <!-- Handle zero on arrays of unions of number types and missings --> - [x] #53516 <!-- permit NamedTuple{<:Any, Union{}} to be created --> - [x] #53643 <!-- Bump CSL to 1.1.1 to fix libgomp bug --> - [x] #53679 <!-- move precompile workload back from Base --> - [x] #53663 <!-- add isassigned methods for reinterpretarray --> - [x] #53662 <!-- [REPL] fix incorrectly cleared line after completions accepted --> - [x] #53611 <!-- Linalg: matprod_dest for Diagonal and adjvec --> - [x] #53659 <!-- fix #52025, re-allow all implicit pointer casts in cconvert for Array --> - [x] #53631 <!-- LAPACK: validate input parameters to throw informative errors --> - [x] #53628 <!-- Make some improvements to the Scoped Values documentation. --> - [x] #53655 <!-- Change tbaa of ptr_phi to tbaa_value --> - [x] #53391 <!-- Default to the medium code model in x86 linux --> - [x] #53699 <!-- Move `isexecutable, isreadable, iswritable` to `filesystem.jl` --> - [x] #41232 <!-- Fix linear indexing for ReshapedArray if the parent has offset axes --> - [x] #53527 <!-- Enable analyzegc checks for try catch and fix found issues --> - [x] #52092 - [x] #53682 <!-- Increase build precompilation --> - [x] #53720 - [x] #53553 <!-- typeintersect: fix `UnionAll` unaliasing bug caused by innervars. --> Contains multiple commits, manual intervention needed: - [ ] #53305 <!-- Propagate inbounds in isassigned with CartesianIndex indices --> Non-merged PRs with backport label: - [ ] #53736 <!-- fix literal-pow to return the right type when the base is -1 --> - [ ] #53707 <!-- Make ScopedValue public --> - [ ] #53696 <!-- add invokelatest to on_done callback in bracketed paste --> - [ ] #53660 <!-- put Logging back in default sysimage --> - [ ] #53509 <!-- revert moving "creating packages" from Pkg.jl --> - [ ] #53452 <!-- RFC: allow Tuple{Union{}}, returning Union{} --> - [ ] #53402 <!-- Add `jl_getaffinity` and `jl_setaffinity` --> - [ ] #52694 <!-- Reinstate similar for AbstractQ for backward compatibility --> - [ ] #51928 <!-- Styled markdown, with a few tweaks --> - [ ] #51816 <!-- User-themable stacktraces --> - [ ] #51811 <!-- Make banner size depend on terminal size --> - [ ] #51479 <!-- prevent code loading from lookin in the versioned environment when building Julia -->
KristofferC
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Backported PRs: - [x] #50759 <!-- Fix outdated usage of scrubbing for log test failures --> - [x] #51830 <!-- Add version string to sysimg triple --> - [x] #53273 <!-- [REPL] Fix typo in using/import completion --> - [x] #53499 <!-- Avoid compiler warning about redefining jl_globalref_t --> - [x] #53424 <!-- yet more atomics & cache-line fixes on work-stealing queue --> - [x] #53596 <!-- build: remove extra .a file --> - [x] #53516 <!-- permit NamedTuple{<:Any, Union{}} to be created --> - [x] #53643 <!-- Bump CSL to 1.1.1 to fix libgomp bug --> - [x] #53655 <!-- Change tbaa of ptr_phi to tbaa_value --> - [x] #53391 <!-- Default to the medium code model in x86 linux --> - [x] #53809 <!-- Add missing GC_POP() in emit_cfunction --> - [x] #53961 <!-- `LazyString` in `LinearAlgebra.checksquare` error message --> - [x] #52913 <!-- Added docstring for Artifacts.jl --> - [x] #53553 <!-- typeintersect: fix `UnionAll` unaliasing bug caused by
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The other patch releases had some issue affecting our build, specifically loading libribasim with Python / ribasim_api (JuliaLang/julia#53643). These should all be resolved now, but I'll trigger a build to be sure.
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Resolves JuliaLang#53363 (cherry picked from commit 5c7d244)
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Resolves #53363