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@LUMC

Leiden University Medical Center

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  1. pytest-workflow pytest-workflow Public

    Configure workflow/pipeline tests using yaml files.

    Python 65 9

  2. kPAL kPAL Public

    Analysis toolkit and programming library for k-mer profiles

    Python 30 6

  3. fastqsplitter fastqsplitter Public

    Splits fastq files evenly

    Python 18 7

  4. EfDS EfDS Public

    Materials for Essentials for Data Science, a course of Statistics and Data Science master at Leiden University.

    Jupyter Notebook 17 27

  5. ribosome-profiling-analysis-framework ribosome-profiling-analysis-framework Public

    Ribosome profiling analysis framework as described in de Klerk E., Fokkema I.F.A.C et al (2015). Alignment, triplet periodicity analysis, detecting ORFs.

    PHP 12 6

  6. dgeAnalysis dgeAnalysis Public

    R package with Shiny application for DGE analysis

    R 12 5

Repositories

Showing 10 of 69 repositories
  • HAMLET Public

    RNA-seq pipeline for AML diagnostics developed in collaboration with the LUMC Hematology department

    LUMC/HAMLET’s past year of commit activity
    Python 6 MIT 4 4 0 Updated Nov 21, 2024
  • barend-botje Public

    Project set up for the retirement of Barend Mons.

    LUMC/barend-botje’s past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated Oct 8, 2024
  • rcourse Public

    Using R for Data Analysis

    LUMC/rcourse’s past year of commit activity
    R 4 GPL-3.0 1 7 0 Updated Sep 10, 2024
  • pytest-workflow Public

    Configure workflow/pipeline tests using yaml files.

    LUMC/pytest-workflow’s past year of commit activity
    Python 65 AGPL-3.0 9 16 2 Updated Aug 4, 2024
  • ansible-galaxy-cluster Public archive

    Ansible role for installing galaxy on a node connected to a cluster.

    LUMC/ansible-galaxy-cluster’s past year of commit activity
    Jinja 0 MIT 0 0 1 Updated Jul 19, 2024
  • EfDS Public

    Materials for Essentials for Data Science, a course of Statistics and Data Science master at Leiden University.

    LUMC/EfDS’s past year of commit activity
    Jupyter Notebook 17 GPL-3.0 27 0 0 Updated May 21, 2024
  • docker-galaxy-uwsgi Public
    LUMC/docker-galaxy-uwsgi’s past year of commit activity
    Dockerfile 0 MIT 1 2 0 Updated Feb 14, 2024
  • shm_csr Public Forked from ErasmusMC-Bioinformatics/shm_csr

    Somatic hypermutation and class switch recombination pipeline

    LUMC/shm_csr’s past year of commit activity
    R 0 MIT 2 0 1 Updated Jan 10, 2024
  • dgeAnalysis Public

    R package with Shiny application for DGE analysis

    LUMC/dgeAnalysis’s past year of commit activity
    R 12 MIT 5 0 1 Updated Jan 8, 2024
  • vcfphasesets Public

    Get variants as phase sets from a VCF file using pysam.

    LUMC/vcfphasesets’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 5, 2024
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