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Somatic hypermutation and class switch recombination pipeline

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.github/workflows
.github/workflows
 
 
baseline
baseline
 
 
change_o
change_o
 
 
tests
tests
 
 
.gitattributes
.gitattributes
 
 
.gitignore
.gitignore
 
 
.shed.yml
.shed.yml
 
 
CHANGELOG.md
CHANGELOG.md
 
 
LICENSE
LICENSE
 
 
README.md
README.md
 
 
aa_histogram.r
aa_histogram.r
 
 
build_container.sh
build_container.sh
 
 
check_unique_id.r
check_unique_id.r
 
 
conda_environment.yml
conda_environment.yml
 
 
create_container_hash.py
create_container_hash.py
 
 
datatypes_conf.xml
datatypes_conf.xml
 
 
gene_identification.py
gene_identification.py
 
 
igm_naive_mutations.py
igm_naive_mutations.py
 
 
imgt_loader.r
imgt_loader.r
 
 
merge.r
merge.r
 
 
merge_and_filter.r
merge_and_filter.r
 
 
mutation_column_checker.py
mutation_column_checker.py
 
 
naive_output.r
naive_output.r
 
 
nt_overview.r
nt_overview.r
 
 
pattern_plots.r
pattern_plots.r
 
 
plot_pdf.r
plot_pdf.r
 
 
remove_files.txt
remove_files.txt
 
 
sequence_overview.py
sequence_overview.py
 
 
shm_clonality.htm
shm_clonality.htm
 
 
shm_csr.htm
shm_csr.htm
 
 
shm_csr.py
shm_csr.py
 
 
shm_csr.r
shm_csr.r
 
 
shm_csr.xml
shm_csr.xml
 
 
shm_downloads.htm
shm_downloads.htm
 
 
shm_first.htm
shm_first.htm
 
 
shm_frequency.htm
shm_frequency.htm
 
 
shm_overview.htm
shm_overview.htm
 
 
shm_selection.htm
shm_selection.htm
 
 
shm_transition.htm
shm_transition.htm
 
 
show_time_as_float.c
show_time_as_float.c
 
 
split_imgt_file.py
split_imgt_file.py
 
 
style.tar.gz
style.tar.gz
 
 
subclass_definition.db.nhr
subclass_definition.db.nhr
 
 
subclass_definition.db.nin
subclass_definition.db.nin
 
 
subclass_definition.db.nsq
subclass_definition.db.nsq
 
 
summary_to_fasta.py
summary_to_fasta.py
 
 
wrapper.sh
wrapper.sh
 
 

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Somatic hypermutation and class switch recombination pipeline

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