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Inital commit of tedana package #1

Merged
merged 13 commits into from
Mar 15, 2018
Merged

Inital commit of tedana package #1

merged 13 commits into from
Mar 15, 2018

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emdupre
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@emdupre emdupre commented Mar 15, 2018

This is a major, mostly functioning commit for starting the tedana package, outside of meica.py.

This package was accepted as a project to Mozilla Open Leaders, so over the next few months I'll be working both to make it better and also more open / accessible.

As suggested by @KirstieJane, the first step in making it open is to link it back to the main ME-ICA organization.

emdupre and others added 13 commits November 15, 2017 10:14
@emdupre
[RF] Initial commit of tedana module
8faa586
@rmarkello
[RF]: MultiEchoData class
9e8d316 
Beginning of class-style refactoring to ease up the global shenanigans going on
in `tedana.py`. Created a MultiEchoData class (`interfaces/data.py`) to hold
input multi-echo data, echo times, create masks, etc. Made stub classes for
other features that can be used to class-ify other aspects of the code. I still
think that the API should be function-based, but this might help behind the
scenes so that related information is stored together.
@emdupre
Merge pull request #10 from rmarkello/medata_class
29ff626 
[RF]: MultiEchoData class
get basic test working
bb39f2f
[ADD] tests on nifti outputs
42c1242
@emdupre
Update repo name for tedana
075e0f1
@emdupre
Update branching recommendations
4efdecc
@emdupre
Add code of conduct
a715bb5
@emdupre
Add basic detail to README
5a832a4
@emdupre
Initial read-the-docs commit
2d05bc1
@emdupre
Reorganize circleci config
e1d07d7
@emdupre
Add an About section
6b77a11
@emdupre
Patch readthedocs link
a4708a6
@emdupre emdupre merged commit a0a1a01 into ME-ICA:master Mar 15, 2018
@prantikk
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prantikk commented Mar 15, 2018 via email

emdupre pushed a commit that referenced this pull request May 10, 2018
@rmarkello
Merge pull request #1 from emdupre/master
b210d2b 
Patches:
* csstepdata saved as JSON rather than a text dump
* Removes unused imports in test.utils to fix linting errors
emdupre pushed a commit that referenced this pull request May 15, 2018
@tsalo
Merge pull request #1 from TomMaullin/refactorFit
6cc8f49 
Refactor Fit
emdupre pushed a commit that referenced this pull request Nov 1, 2018
@jbteves
Merge pull request #1 from jbteves/jbteves-conda-env
a67a4c1 
Update README.md
emdupre pushed a commit that referenced this pull request Sep 6, 2019
@monicayao
Merge pull request #1 from ME-ICA/master
3bcb900 
update
CesarCaballeroGaudes added a commit to smoia/tedana that referenced this pull request Nov 29, 2019
@CesarCaballeroGaudes
Merge pull request ME-ICA#1 from smoia/patch-1
1def734 
Changed default compute_zvalues of get_coeffs to False
@tsalo tsalo mentioned this pull request Nov 20, 2020
Open
awstanton added a commit to awstanton/sage-tedana that referenced this pull request Feb 3, 2023
@awstanton
Merge pull request ME-ICA#1 from awstanton/basic.simpleoptcom
6957ee5 
Basic.simpleoptcom
notZaki pushed a commit to notZaki/tedana that referenced this pull request Jan 26, 2024
@eurunuela
Merge pull request ME-ICA#1 from martaarbizu/Fix-style-issues
b0be904 
Fix style issues
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3 participants
@emdupre @prantikk @rmarkello