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[DOC] Add resources to RTD site #99

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Jul 30, 2018
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4 changes: 2 additions & 2 deletions docs/introduction.rst → docs/approach.rst
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@@ -1,5 +1,5 @@
Introduction
============
tedana's approach
=================

``tedana`` works by decomposing multi-echo BOLD data via PCA and ICA.
These components are then analyzed to determine whether they are TE-dependent
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3 changes: 2 additions & 1 deletion docs/index.rst
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Expand Up @@ -53,7 +53,8 @@ tedana is licensed under GNU Lesser General Public License version 2.1.
:maxdepth: 2
:caption: Contents:

introduction
multi-echo
approach
usage
api
contributing
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45 changes: 45 additions & 0 deletions docs/multi-echo.rst
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Multi-echo fMRI
===============
In multi-echo (ME) fMRI, data are acquired for multiple echo times, resulting in
multiple time series for each voxel.

The physics of multi-echo fMRI
------------------------------

Why use multi-echo?
-------------------

Resources
---------

Journal articles
****************
* A `review`_ on multi-echo fMRI and its applications

.. _review: https://www.ncbi.nlm.nih.gov/pubmed/28363836

Videos
******
* An `educational session from OHBM 2017`_ by Dr. Prantik Kundu about multi-echo denoising
* A `series of lectures from the OHBM 2017 multi-echo session`_ on multiple facets of multi-echo data analysis

.. _educational session from OHBM 2017: https://www.pathlms.com/ohbm/courses/5158/sections/7788/video_presentations/75977
.. _series of lectures from the OHBM 2017 multi-echo session: https://www.pathlms.com/ohbm/courses/5158/sections/7822

Sequences
*********
* Multi-echo sequences: who has them and how to get them.

Datasets
********
A small number of multi-echo datasets have been made public so far. This list is
not necessarily up-to-date, so please check out OpenNeuro to potentially
find more.

* `Multi-echo fMRI replication sample of autobiographical memory, prospection and theory of mind reasoning tasks`_
* `Multi-echo Cambridge`_
* `Multiband multi-echo imaging of simultaneous oxygenation and flow timeseries for resting state connectivity`_

.. _Multi-echo fMRI replication sample of autobiographical memory, prospection and theory of mind reasoning tasks: https://openneuro.org/datasets/ds000210/
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Is this rendering correctly ? it looks commented out on GitHub, but I'm not sure why.

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Confirmed with @tsalo that it renders ok.

.. _Multi-echo Cambridge: https://openneuro.org/datasets/ds000258
.. _Multiband multi-echo imaging of simultaneous oxygenation and flow timeseries for resting state connectivity: https://openneuro.org/datasets/ds000254