Disable timing in scorpio build

[xylar]

This seems to be a problem with standalone MPAS builds. It was introduced in #359, apparently with insufficient testing.

Part of this fix is some patching of SCORPIO 1.3.2 in our spack branch.

[pep8speaks]

Hello @xylar! Thanks for opening this PR. We checked the lines you've touched for PEP 8 issues, and found:

• In the file conda/bootstrap.py:

Line 308:80: E501 line too long (86 > 79 characters)

[xylar]

Testing

This passes the ocean pr test suite on Anvil with Intel and Intel-MPI, and the MALI full_integration test suite with Gnu and MVAPICH on both Anvil. I'm working on the same test on Badger. The baseline was from compass before SCORPIO 1.3.2 was added.

Update: Badger MALI tests also passed!

[xylar]

Deployment

I have deployed the following machines and configurations:

• Anvil intel impi
• Anvil intel openmpi
• Anvil intel mvapich
• Anvil gnu openmpi
• Anvil gnu mvapich
• Badger intel impi
• Badger gnu mvapich
• Chrysalis intel impi
• Chrysalis intel openmpi
• Chrysalis gnu openmpi
• Compy intel impi
• Cori-Haswell intel mpt
• Cori-Haswell gnu mpt