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Run tests in the MEDS-ETL repository. Ref #8.
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tompollard committed Jan 11, 2024
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45 changes: 45 additions & 0 deletions .github/workflows/meds-etl-test.yml
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name: Run MEDS-ETL tests

on:
push:
branches: [ "main" ]
pull_request:
branches: [ "main" ]

jobs:
build:

runs-on: ubuntu-latest

strategy:
matrix:
python-version: ["3.10"]

steps:
- uses: actions/checkout@v3

# Clone the MEDS-ETL repository
- name: Clone MEDS-ETL repository
run: git clone https://github.com/Medical-Event-Data-Standard/meds_etl.git

- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v3
with:
python-version: ${{ matrix.python-version }}

- name: Install dependencies
run: |
python -m pip install --upgrade pip
python -m pip install flake8 pytest
# Install MEDS-ETL
- name: Install MEDS-ETL
run: |
cd meds_etl
python -m pip install .
# Run MEDS-ETL tests
- name: Run MEDS-ETL tests
run: |
cd meds_etl
pytest -v

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