cluster_group.tsv re-arrangement

[eduardo-blanco]

Hi all,

In some of my curated sessions, I noticed that the file cluster_info.tsv is re-arranged or has missed information, while cluster_group.tsv seems correct, overall is not common to occur but I wonder what might be the reason.

Below I show a comparison of two different sessions, the left one showing the re-arrangement.

What do you think might be the issue?

Thank you for the tools
Eduardo

[rossant]

it looks like the program you're using does not load the tsv files properly, no?
Could you copy paste the contents of the files themselves, by loading them in notepad or another text editor?

[eduardo-blanco]

Thank you for your fast response:

the output of the looks like this:

id Amplitude ContamPct KSLabel amp channel depth firing_rate group n_spikes shank
0 74.50000000 100.00000000 mua 4.52919674 65 2320.00000000 8.7 spk/s 23674 0
1 66.20000000 100.00000000 mua 4.62656784 65 2320.00000000 6.3 spk/s 17234 0
2 42.00000000 100.00000000 mua 2.95313883 67 2360.00000000 1.2 spk/s 3207 0
3 113.30000000 100.00000000 mua 7.19309378 71 2440.00000000 9.1 spk/s 24621 0
4 161.80000000 100.00000000 mua 4.53980684 72 2460.00000000 0.8 spk/s 2294 0
5 411.80000000 100.00000000 mua 6.05658054 72 2460.00000000 0.5 spk/s 1279 0
6 47.40000000 100.00000000 mua 2.95211887 76 2540.00000000 6.3 spk/s 17101 0
7 62.60000000 100.00000000 mua 4.37164497 77 2560.00000000 2.1 spk/s 5608 0
8 96.20000000 100.00000000 mua 3.90495682 78 2580.00000000 0.5 spk/s 1402 0
9 39.90000000 100.00000000 mua 2.90963125 80 2620.00000000 1.6 spk/s 4242 0
10 50.70000000 100.00000000 mua 2.69935703 89 2800.00000000 0.8 spk/s 2087 0
11 37.90000000 100.00000000 mua 2.17392397 80 2620.00000000 3.3 spk/s 8853 0
12 168.80000000 100.00000000 mua 4.07830477 83 2680.00000000 1.5 spk/s 3980 0
13 44.30000000 100.00000000 mua 2.94632292 83 2680.00000000 7.1 spk/s 19238 0
14 54.90000000 100.00000000 mua 4.08887815 84 2700.00000000 1.2 spk/s 3370 0
15 66.80000000 100.00000000 mua 4.43079662 84 2700.00000000 1.9 spk/s 5219 0
16 58.50000000 100.00000000 mua 4.08405209 85 2720.00000000 0.9 spk/s 2504 0
17 45.40000000 100.00000000 mua 3.12450027 86 2740.00000000 4.3 spk/s 11811 0
18 69.30000000 100.00000000 mua 4.18443012 91 2840.00000000 2.3 spk/s 6157 0
19 61.40000000 100.00000000 mua 3.21874952 91 2840.00000000 1.8 spk/s 5010 0
20 66.30000000 100.00000000 mua 2.02249146 94 2900.00000000 3.8 spk/s 10375 0
21 70.30000000 100.00000000 mua 4.84725237 107 3160.00000000 1.1 spk/s 2865 0
22 466.40000000 100.00000000 mua 10.65668297 119 3400.00000000 2.1 spk/s 5759 0
23 39.80000000 100.00000000 mua 3.13121080 112 3260.00000000 7.6 spk/s 20677 0
24 264.50000000 100.00000000 mua 5.87457943 114 3300.00000000 0.4 spk/s 1051 0
25 2474.20000000 100.00000000 mua 9.34759617 119 3400.00000000 0.2 spk/s 437 0
26 26.10000000 100.00000000 mua 1.89938211 116 3340.00000000 13.2 spk/s 35795 0
27 41.60000000 100.00000000 mua 2.53896952 127 3560.00000000 16.2 spk/s 44193 0
28 1388.40000000 100.00000000 mua 6.92367792 119 3400.00000000 0.1 spk/s 335 0
29 86.20000000 100.00000000 mua 6.74475622 128 4080.00000000 1.4 spk/s 3791 0
30 79.60000000 3.70000000 good 7.33429098 130 4120.00000000 30.5 spk/s 82997 0
31 130.20000000 3.90000000 good 10.87976742 133 4180.00000000 4.9 spk/s 13279 0
32 78.60000000 100.00000000 mua 6.36459255 133 4180.00000000 3.1 spk/s 8447 0
33 55.20000000 100.00000000 mua 3.92708588 148 4480.00000000 5.7 spk/s 15431 0
34 119.90000000 100.00000000 mua 9.14369202 136 4240.00000000 3.9 spk/s 10598 0
35 114.80000000 100.00000000 mua 7.46712875 135 4220.00000000 2.9 spk/s 7754 0
36 100.60000000 100.00000000 mua 6.92347193 135 4220.00000000 5.4 spk/s 14804 0
37 202.50000000 5.30000000 good 9.42743683 136 4240.00000000 22.7 spk/s 61836 0
39 87.00000000 100.00000000 mua 6.30117607 137 4260.00000000 0.1 spk/s 193 0
40 90.50000000 9.30000000 good 6.86560535 138 4280.00000000 4.4 spk/s 11902 0
41 87.50000000 8.70000000 good 6.74385548 140 4320.00000000 12.7 spk/s 34466 0
42 370.80000000 100.00000000 mua 5.41706181 135 4220.00000000 0.1 spk/s 338 0
43 73.10000000 100.00000000 mua 5.69921637 141 4340.00000000 3.7 spk/s 10103 0
44 193.10000000 0.00000000 good 6.92884350 141 4340.00000000 2.1 spk/s 5723 0
45 296.00000000 0.00000000 good 7.01653910 142 4360.00000000 3.0 spk/s 8238 0
46 99.20000000 2.10000000 good 8.07301807 143 4380.00000000 22.1 spk/s 60078 0
47 83.90000000 100.00000000 mua 6.49300146 147 4460.00000000 15.3 spk/s 41538 0
48 183.20000000 2.70000000 good 7.42848825 148 4480.00000000 5.2 spk/s 14225 0
49 144.00000000 100.00000000 mua 8.89177990 149 4500.00000000 9.2 spk/s 24959 0
50 161.20000000 100.00000000 mua 8.99527836 151 4540.00000000 16.7 spk/s 45455 0
51 115.40000000 100.00000000 mua 8.88544941 152 4560.00000000 6.3 spk/s 17077 0
52 326.20000000 0.00000000 good 11.32279015 153 4580.00000000 6.5 spk/s 17812 0
53 132.70000000 100.00000000 mua 9.25876236 154 4600.00000000 18.5 spk/s 50289 0
54 151.90000000 100.00000000 mua 12.47369957 155 4620.00000000 17.0 spk/s 46204 0
55 113.10000000 100.00000000 mua 8.75651932 155 4620.00000000 10.7 spk/s 29151 0
56 176.30000000 0.00000000 good 8.35138130 157 4660.00000000 4.0 spk/s 10947 0
57 134.20000000 100.00000000 mua 10.30241394 158 4680.00000000 7.6 spk/s 20589 0
58 112.10000000 100.00000000 mua 8.45688629 159 4700.00000000 9.5 spk/s 25725 0
59 110.80000000 100.00000000 mua 5.49339724 160 4720.00000000 0.0 spk/s 56 0
60 129.90000000 100.00000000 mua 8.58007240 159 4700.00000000 12.1 spk/s 33032 0
61 144.20000000 100.00000000 mua 10.74298668 159 4700.00000000 11.8 spk/s 32223 0
62 131.50000000 9.50000000 good 11.35933495 159 4700.00000000 21.9 spk/s 59674 0
63 113.70000000 100.00000000 mua 7.99931383 161 4740.00000000 9.0 spk/s 24360 0
64 123.00000000 100.00000000 mua 7.99841595 162 4760.00000000 9.9 spk/s 26916 0
65 110.70000000 100.00000000 mua 8.71144581 164 4800.00000000 11.2 spk/s 30416 0
66 94.50000000 100.00000000 mua 7.47307348 166 4840.00000000 1.8 spk/s 4788 0
67 139.20000000 100.00000000 mua 10.67665482 166 4840.00000000 9.9 spk/s 26819 0
68 121.60000000 9.70000000 good 8.40779114 166 4840.00000000 10.3 spk/s 28018 0
69 123.00000000 100.00000000 mua 8.61588001 172 4960.00000000 8.0 spk/s 21815 0
70 267.80000000 0.30000000 good 9.80887318 169 4900.00000000 4.2 spk/s 11548 0
71 190.10000000 100.00000000 mua 12.02559662 169 4900.00000000 7.4 spk/s 20193 0
72 150.80000000 100.00000000 mua 10.24229908 171 4940.00000000 11.1 spk/s 30325 0
73 161.80000000 100.00000000 mua 11.95879364 171 4940.00000000 6.5 spk/s 17607 0
74 322.50000000 0.00000000 good 11.44700146 171 4940.00000000 2.3 spk/s 6212 0
75 707.40000000 0.00000000 good 13.53602409 172 4960.00000000 4.2 spk/s 11356 0
76 382.10000000 1.90000000 good 16.37260246 172 4960.00000000 4.0 spk/s 10944 0
77 169.00000000 100.00000000 mua 13.43608761 173 4980.00000000 5.3 spk/s 14458 0
78 211.10000000 100.00000000 mua 14.57031631 173 4980.00000000 0.1 spk/s 264 0
79 284.00000000 5.60000000 good 11.14620018 174 5000.00000000 7.4 spk/s 20091 0
80 241.00000000 100.00000000 mua 16.45082474 183 5180.00000000 13.2 spk/s 35832 0
81 213.00000000 100.00000000 mua 13.28920555 175 5020.00000000 8.7 spk/s 23537 0
82 253.80000000 0.80000000 good 8.02162647 178 5080.00000000 3.9 spk/s 10675 0
83 249.90000000 100.00000000 mua 15.02523708 183 5180.00000000 9.6 spk/s 26118 0
84 264.60000000 100.00000000 mua 6.67835999 180 5120.00000000 0.7 spk/s 1869 0
85 105.90000000 100.00000000 mua 7.45126534 180 5120.00000000 3.8 spk/s 10235 0
87 2148.00000000 100.00000000 mua 10.78480339 183 5180.00000000 0.2 spk/s 410 0
89 54.30000000 100.00000000 mua 4.03477287 172 4960.00000000 7.2 spk/s 19713 0
90 45.20000000 100.00000000 mua 3.23831654 180 5120.00000000 10.4 spk/s 28397 0
91 81.30000000 100.00000000 mua 4.46481943 183 5180.00000000 2.0 spk/s 5356 0
92 413.80000000 100.00000000 mua 4.87126398 192 5860.00000000 0.2 spk/s noise 493 0
93 249.30000000 100.00000000 mua 4.54650116 192 5860.00000000 0.4 spk/s noise 1199 0
94 320.20000000 100.00000000 mua 7.88370991 206 6140.00000000 0.2 spk/s noise 437 0
95 1217.10000000 100.00000000 mua 7.78649998 192 5860.00000000 0.5 spk/s noise 1453 0
96 358.00000000 100.00000000 mua 3.29744434 193 5880.00000000 0.3 spk/s noise 813 0
97 165.30000000 100.00000000 mua 5.47222853 219 6400.00000000 0.2 spk/s noise 667 0
98 94.10000000 100.00000000 mua 2.39517593 114 3300.00000000 2.2 spk/s 5907 0
99 143.50000000 100.00000000 mua 9.64942551 206 6140.00000000 5.6 spk/s noise 15189 0
100 255.00000000 100.00000000 mua 7.81779289 206 6140.00000000 0.0 spk/s noise 112 0
101 69.40000000 100.00000000 mua 3.23370028 196 5940.00000000 0.0 spk/s noise 108 0
102 67.00000000 5.00000000 good 5.07393217 199 6000.00000000 1.2 spk/s noise 3374 0
103 118.00000000 100.00000000 mua 7.00357246 199 6000.00000000 0.7 spk/s noise 1906 0
104 137.20000000 0.40000000 good 8.00227356 199 6000.00000000 1.5 spk/s noise 4195 0
105 99.00000000 0.80000000 good 5.90198898 199 6000.00000000 2.1 spk/s noise 5806 0
106 194.20000000 100.00000000 mua 5.03984261 199 6000.00000000 0.0 spk/s noise 107 0
107 171.00000000 100.00000000 mua 8.75585270 199 6000.00000000 18.6 spk/s noise 50517 0
108 43.50000000 100.00000000 mua 3.09146452 203 6080.00000000 5.2 spk/s noise 14071 0
109 230.40000000 100.00000000 mua 8.55657768 206 6140.00000000 0.1 spk/s noise 184 0
110 75.80000000 100.00000000 mua 3.76033926 202 6060.00000000 0.1 spk/s noise 235 0
111 46.30000000 100.00000000 mua 3.69214129 212 6260.00000000 5.9 spk/s noise 16077 0
112 160.60000000 100.00000000 mua 10.07580376 206 6140.00000000 5.6 spk/s noise 15104 0
113 256.10000000 100.00000000 mua 12.20766830 206 6140.00000000 8.3 spk/s noise 22550 0
114 888.40000000 100.00000000 mua 15.46995926 206 6140.00000000 0.3 spk/s noise 815 0
115 376.30000000 100.00000000 mua 17.26853943 206 6140.00000000 1.6 spk/s noise 4349 0
116 1133.30000000 100.00000000 mua 18.61070061 206 6140.00000000 0.8 spk/s noise 2149 0
117 165.40000000 100.00000000 mua 11.23192692 206 6140.00000000 8.7 spk/s noise 23554 0
118 145.80000000 100.00000000 mua 3.65886283 206 6140.00000000 0.5 spk/s noise 1289 0
119 78.40000000 100.00000000 mua 5.16162872 212 6260.00000000 0.1 spk/s noise 214 0
120 128.00000000 100.00000000 mua 3.69563103 251 7040.00000000 0.1 spk/s noise 287 0
121 82.20000000 100.00000000 mua 3.62821651 221 6440.00000000 0.9 spk/s noise 2395 0
122 150.20000000 100.00000000 mua 5.60404825 210 6220.00000000 0.0 spk/s noise 103 0
123 183.60000000 100.00000000 mua 5.24529696 217 6360.00000000 0.1 spk/s noise 325 0
124 51.10000000 100.00000000 mua 3.83949041 215 6320.00000000 5.8 spk/s noise 15823 0
125 157.80000000 100.00000000 mua 6.50575447 217 6360.00000000 0.1 spk/s noise 144 0
126 481.20000000 100.00000000 mua 5.53674412 215 6320.00000000 0.1 spk/s noise 361 0
127 111.30000000 100.00000000 mua 3.90140724 199 6000.00000000 1.2 spk/s noise 3245 0
129 177.80000000 100.00000000 mua 3.54686761 218 6380.00000000 0.2 spk/s noise 584 0
138 336.10000000 100.00000000 mua 8.31800365 206 6140.00000000 1.8 spk/s noise 5010 0
139 72.30000000 100.00000000 mua 5.74846840 231 6640.00000000 4.0 spk/s noise 10897 0
140 2044.20000000 100.00000000 mua 8.18932533 233 6680.00000000 0.1 spk/s noise 332 0
142 513.50000000 100.00000000 mua 9.77037430 233 6680.00000000 1.0 spk/s noise 2632 0
144 109.80000000 100.00000000 mua 5.37228584 242 6860.00000000 6.4 spk/s noise 17316 0
147 153.70000000 100.00000000 mua 4.79176617 227 6560.00000000 0.9 spk/s noise 2532 0
148 215.20000000 100.00000000 mua 4.90677786 233 6680.00000000 0.7 spk/s noise 1828 0
149 83.40000000 100.00000000 mua 5.30410099 252 7060.00000000 11.5 spk/s noise 31361 0
151 461.40000000 100.00000000 mua 4.71191311 233 6680.00000000 0.2 spk/s noise 631 0
152 111.70000000 100.00000000 mua 4.37951279 77 2560.00000000 0.9 spk/s 2428 0
153 475.30000000 100.00000000 mua 4.49096727 78 2580.00000000 0.1 spk/s 376 0
154 230.90000000 100.00000000 mua 3.80724359 81 2640.00000000 0.1 spk/s 286 0
155 167.20000000 100.00000000 mua 10.59670067 89 2800.00000000 4.5 spk/s 12210 0
156 680.80000000 100.00000000 mua 5.17419147 84 2700.00000000 0.2 spk/s 428 0
157 184.50000000 100.00000000 mua 4.40794563 89 2800.00000000 0.5 spk/s 1463 0
158 120.50000000 100.00000000 mua 4.18592978 85 2720.00000000 0.2 spk/s 624 0
159 150.90000000 100.00000000 mua 4.28067875 91 2840.00000000 0.5 spk/s 1389 0
160 50.40000000 0.00000000 good 4.91184092 107 3160.00000000 2.1 spk/s 5792 0
161 193.70000000 4.40000000 good 11.79333496 119 3400.00000000 10.2 spk/s 27687 0
162 1055.90000000 100.00000000 mua 11.63196564 119 3400.00000000 0.2 spk/s 568 0
163 543.80000000 100.00000000 mua 7.37204742 119 3400.00000000 0.4 spk/s 1167 0
164 525.00000000 100.00000000 mua 6.09475613 116 3340.00000000 0.2 spk/s 525 0
165 182.40000000 100.00000000 mua 7.38122416 135 4220.00000000 2.1 spk/s 5616 0
166 1521.30000000 100.00000000 mua 6.33255053 135 4220.00000000 0.2 spk/s 588 0
167 117.70000000 100.00000000 mua 9.23097610 149 4500.00000000 7.1 spk/s 19420 0
168 152.40000000 100.00000000 mua 12.09588814 169 4900.00000000 0.6 spk/s 1594 0
169 287.10000000 100.00000000 mua 16.36822128 172 4960.00000000 12.4 spk/s 33770 0
170 247.90000000 100.00000000 mua 14.11677074 174 5000.00000000 3.9 spk/s 10676 0
171 552.20000000 100.00000000 mua 14.81251144 174 5000.00000000 1.9 spk/s 5054 0
172 309.00000000 100.00000000 mua 13.23150539 176 5040.00000000 7.2 spk/s 19562 0
173 411.50000000 100.00000000 mua 8.35261631 177 5060.00000000 2.0 spk/s 5414 0
174 125.70000000 2.90000000 good 7.77153540 183 5180.00000000 15.2 spk/s 41463 0
175 282.60000000 100.00000000 mua 7.15953541 183 5180.00000000 0.7 spk/s 1888 0
176 96.60000000 100.00000000 mua 4.58886862 192 5860.00000000 1.1 spk/s noise 3029 0
177 165.50000000 2.50000000 good 12.24347782 202 6060.00000000 34.6 spk/s noise 94224 0
178 312.20000000 100.00000000 mua 4.33193779 220 6420.00000000 0.2 spk/s noise 453 0
179 231.90000000 100.00000000 mua 17.08504486 206 6140.00000000 2.9 spk/s noise 7838 0
180 55.10000000 100.00000000 mua 3.28854871 209 6200.00000000 0.1 spk/s noise 174 0
181 107.20000000 100.00000000 mua 7.09947300 231 6640.00000000 3.8 spk/s noise 10380 0
182 793.50000000 100.00000000 mua 17.48976517 233 6680.00000000 1.4 spk/s noise 3876 0
186 190.40000000 100.00000000 mua 11.90426350 233 6680.00000000 2.7 spk/s noise 7215 0
187 804.50000000 100.00000000 mua 9.51361847 226 6540.00000000 0.7 spk/s noise 1884 0
188 345.80000000 100.00000000 mua 12.28863811 233 6680.00000000 0.6 spk/s noise 1704 0
189 76.20000000 100.00000000 mua 3.41927838 84 2700.00000000 0.5 spk/s 1367 0
190 48.10000000 100.00000000 mua 3.56238341 193 5880.00000000 0.0 spk/s noise 111 0
191 2308.10000000 100.00000000 mua 17.75636292 233 6680.00000000 0.3 spk/s noise 743 0
192 1974.40000000 100.00000000 mua 17.74783325 233 6680.00000000 0.1 spk/s noise 368 0
193 804.40000000 100.00000000 mua 10.22878361 233 6680.00000000 0.3 spk/s noise 804 0
194 2104.50000000 100.00000000 mua 15.28512383 206 6140.00000000 0.1 spk/s noise 379 0
195 1232.30000000 100.00000000 mua 5.31948853 84 2700.00000000 0.1 spk/s 311 0
197 3.60263872 218 6380.00000000 0.3 spk/s noise 924 0
198 3.60263872 218 6380.00000000 5.1 spk/s noise 13789 0
199 3.60263872 218 6380.00000000 2.1 spk/s noise 5715 0
201 15.01002598 222 6460.00000000 0.3 spk/s noise 701 0
204 20.44759369 222 6460.00000000 29.8 spk/s mua 81147 0
205 20.44759369 222 6460.00000000 0.5 spk/s noise 1405 0
206 15.01002598 222 6460.00000000 15.3 spk/s mua 41628 0
207 15.01002598 222 6460.00000000 0.1 spk/s noise 232 0
208 9.60119438 223 6480.00000000 13.5 spk/s good 36836 0
209 9.60119438 223 6480.00000000 0.2 spk/s noise 527 0
211 9.69544315 223 6480.00000000 0.0 spk/s noise 104 0
212 9.69544315 223 6480.00000000 6.8 spk/s good 18539 0
213 9.69544315 223 6480.00000000 0.0 spk/s noise 28 0
215 18.11770821 224 6500.00000000 0.2 spk/s noise 589 0
217 7.44077396 224 6500.00000000 0.1 spk/s noise 167 0
219 16.99105453 224 6500.00000000 0.0 spk/s noise 126 0
222 7.44077396 224 6500.00000000 0.0 spk/s noise 130 0
223 16.99105453 224 6500.00000000 3.6 spk/s mua 9862 0
224 16.99105453 224 6500.00000000 0.0 spk/s noise 21 0
226 226.30000000 100.00000000 mua 18.13373566 224 6500.00000000 0.0 spk/s noise 53 0
228 7.44077396 224 6500.00000000 0.0 spk/s noise 17 0
229 18.11770821 224 6500.00000000 13.3 spk/s mua 36099 0
230 18.11770821 224 6500.00000000 0.0 spk/s noise 130 0
231 226.30000000 100.00000000 mua 18.13373566 224 6500.00000000 1.4 spk/s mua 3704 0
232 226.30000000 100.00000000 mua 18.13373566 224 6500.00000000 0.1 spk/s noise 265 0
234 7.44077396 224 6500.00000000 0.0 spk/s noise 2 0
236 7.44077396 224 6500.00000000 3.5 spk/s noise 9580 0
237 7.44077396 224 6500.00000000 2.1 spk/s noise 5655 0
238 112.20000000 100.00000000 mua 8.92309284 225 6520.00000000 14.1 spk/s noise 38466 0
239 112.20000000 100.00000000 mua 8.92309284 225 6520.00000000 0.5 spk/s noise 1280 0
240 77.60000000 100.00000000 mua 5.73003960 228 6580.00000000 11.8 spk/s noise 32213 0
241 77.60000000 100.00000000 mua 5.73003960 228 6580.00000000 0.7 spk/s noise 1947 0
243 154.50000000 100.00000000 mua 6.21410608 231 6640.00000000 0.2 spk/s noise 634 0
244 154.50000000 100.00000000 mua 6.21410608 231 6640.00000000 4.8 spk/s noise 13065 0
245 154.50000000 100.00000000 mua 6.21410608 231 6640.00000000 0.4 spk/s noise 988 0
247 194.60000000 100.00000000 mua 11.52586460 233 6680.00000000 0.3 spk/s noise 732 0
248 106.00000000 100.00000000 mua 8.03458595 233 6680.00000000 10.0 spk/s noise 27199 0
249 106.00000000 100.00000000 mua 8.03458595 233 6680.00000000 0.4 spk/s noise 1220 0
250 194.60000000 100.00000000 mua 11.52586460 233 6680.00000000 9.3 spk/s noise 25185 0
251 194.60000000 100.00000000 mua 11.52586460 233 6680.00000000 0.1 spk/s noise 375 0
252 227.40000000 1.10000000 good 17.56162643 233 6680.00000000 20.8 spk/s noise 56573 0
253 227.40000000 1.10000000 good 17.56162643 233 6680.00000000 0.5 spk/s noise 1315 0
255 55.10000000 3.70000000 good 3.93136215 243 6880.00000000 0.1 spk/s noise 212 0
256 55.10000000 3.70000000 good 3.93136215 243 6880.00000000 3.6 spk/s noise 9713 0
257 55.10000000 3.70000000 good 3.93136215 243 6880.00000000 2.1 spk/s noise 5583 0
258 92.60000000 100.00000000 mua 5.90647364 247 6960.00000000 8.5 spk/s noise 23040 0
259 92.60000000 100.00000000 mua 5.90647364 247 6960.00000000 0.2 spk/s noise 624 0

The function that I use to read the file is from the function readClusterGroupsCSV:

fid = fopen(filename);
C = textscan(fid, '%s%s');
fclose(fid);

I should comment for clarification than only a subset of the cells had been curated but that is the same case for all my sessions and only a few of them (5 out of 52) will show the issue.

[rossant]

this file looks correct. I suppose the readClusterGroupsCSV only works on cluster_groups.tsv and not cluster_info.tsv which is a special file created by phy and that exports the entire contents of the cluster view. It has many columns whereas all other tsv should have only 2 columns. cluster_info.tsv is typically not expected to be read unless you want to do your own analysis, independently of KS2 and phy

[eduardo-blanco]

I see I was not aware. These recordings have several probes and I used "info.tvs" mainly for getting the channel were KS identify the cluster to focus only on shanks were there is manual curation but I detect the inconsistency in few files. So better would be to add the channel as an output as you indicated in the plugin examples: https://phy.readthedocs.io/en/latest/plugins/.

I will try that then.
Thanks a lot for the help
Eduardo

[eduardo-blanco]

As an alternative, I loaded info.tsv using the following specs for textscan:

fid = fopen(filename);
C = textscan(fid, '%s%s%s%s%s%s%s%s%s%s%s','Whitespace','','TreatAsEmpty','','Delimiter','\t');
fclose(fid);

(taken from https://de.mathworks.com/matlabcentral/answers/157803-whitespace-problem-with-textscan#comment_241588)

Now I can access all info. I cross-checked with the output from group.tsv, and at least in my dataset, there is no mismatch.

Thanks for a lot for orient me
Eduardo

[Coglet00]

my clusterview doesnt show up in phy and i cant find the function readClusterGroupsCSV. is this part of phy ?