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biased against narrow wave-shape spikes? #395

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esiabri opened this issue May 5, 2021 · 2 comments · Fixed by #595
Closed

biased against narrow wave-shape spikes? #395

esiabri opened this issue May 5, 2021 · 2 comments · Fixed by #595

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@esiabri
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esiabri commented May 5, 2021

Hi,
thank you for this amazing tool!
I've noticed that it seems that the narrow wave-shape spikes (coming from putative FS neurons) are more probable to be missed. I have attached here two sample snapshots from the Kilosort GUI, as it can be seen spikes with lower amplitudes were detected while larger narrower spikes are missed. I was wondering if I miss something and I can fix this through some parameters? does it have something to do with the fact they are less probable to be detected on multiple channels?
this is with kilosort 3 btw
Capture1
Capture2

@marius10p
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It might be that the optimization did not find a single-channel fast spike template. Could you please try to plot wTEMP for this recording? There should be 6 traces, and one of those should be a fast spike.

@esiabri
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esiabri commented May 11, 2021

yes, that's correct
image

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2 participants