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[BUG] Cannot save flows and cellprob in GUI #1102

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qin-yu opened this issue Feb 10, 2025 · 0 comments
Closed

[BUG] Cannot save flows and cellprob in GUI #1102

qin-yu opened this issue Feb 10, 2025 · 0 comments
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@qin-yu
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qin-yu commented Feb 10, 2025

Describe the bug

Saving flow and prob in GUI leads to:

Traceback (most recent call last):
  File "/yu/miniconda3/envs/cellpose-3.1/lib/python3.10/site-packages/cellpose/gui/menus.py", line 68, in <lambda>
    parent.saveFlows.triggered.connect(lambda: io._save_flows(parent))
  File "/yu/miniconda3/envs/cellpose-3.1/lib/python3.10/site-packages/cellpose/gui/io.py", line 581, in _save_flows
    imsave(base + "_cp_flows.tif", parent.flows[4][:-1])
IndexError: list index out of range

To Reproduce

Steps to reproduce the behavior:

  1. Predict a 3D image in Cellpose GUI
  2. CTRL + F
@qin-yu qin-yu added the bug Something isn't working label Feb 10, 2025
qin-yu added a commit to qin-yu/cellpose that referenced this issue Feb 10, 2025
@qin-yu
fix saving of flow fields and cell probability in GUI (MouseLand#1102)
b6a15ab
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@carsen-stringer @qin-yu