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Merge aerorahul:feature/s4 into develop #17

Commits on Dec 17, 2019

  1. Change acc# on WCOSS to GFS-DEV (NCAR#17)

    * Revert old src/incmake/component_CCPP.mk
    
    * Got back src/incmake/component_CCPP.mk file
    
    * NEMSfv3gfs and FV3-MOM6-CICE5 moved to github
    
    * Change account number form FV3GFS-T2O to GFS-DEV on WCOSS machines.
    RatkoVasic-NOAA authored Dec 17, 2019
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Commits on Jan 14, 2020

  1. debug mode for NEMS, additional minor changes in component mk files (N…

    …OAA-EMC#21)
    
    * minor updates to component*.mk files
    
    * Syno for ice_fraction and sea_ice_concentration
    
    * updated syno for ice-frac
    
    * * adding DATM-MOM6-CICE5 as a test
    * updating NEMSfv3gfs and FV3-MOM6-CICE5 to github URLs
    * adding extra platforms for some of the apps
    
    * fix divide by zero in non-CMEPS version of NEMS
    
    * update clean command for newest MOM6
    
    * remove unintended changes
    
    Co-authored-by: Jessica Meixner <jessica.meixner@noaa.gov>
    2 people authored and MinsukJi-NOAA committed Jan 14, 2020
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Commits on Jan 21, 2020

  1. Code changes to support DEBUG compilation based on appBuilder specifi…

    …cation (NOAA-EMC#23)
    
    1. component_MOM6.mk sets the MOM6_MAKEOPT environment variable for compile.sh
    
    2. component_CICE.mk sets the CICE_MAKEOPT environment variable for comp_ice.backend
    MinsukJi-NOAA authored Jan 21, 2020
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Commits on Jan 27, 2020

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Commits on Feb 25, 2020

  1. Add GNU LGPL (NOAA-EMC#31)

    * Add GNU LGPL
    
    * Fix typo in LGPL
    MinsukJi-NOAA authored Feb 25, 2020
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Commits on Feb 27, 2020

  1. Feature/changefldnames (NOAA-EMC#29)

    * remove ice-ocean merge in prep_atm
    
    * remove atm-ocn in prep_atm;remove associated FBs
    
    * comment vs ifdef
    
    * remove unnecessary prep_atm merges
    
    * remove custom merges in prep_atm which are not needed when
    field name changes are made of fv3 side for import directly
    from cice
    
    * move sum(weights) into datm part of loop; add wgtp01 for netLW
    merge
    
    * remove unused code in prep_atm
    
    * use RWFields_tile for mediator dumps
    
    * clean up commented out code used for testing
    
    * add print statement of slow and fast counters for field dumping
    
    * more PET log info printout
    
    * add ability to write mediator a-o fluxes to file with statewrite_flag
    
    * return statewrite flags to their default setting
    
    * mediator aborts if a required mediator restart
    file does not exist
    
    * add condition of 'not coldstart' to mediator abort
    when mediator restart files are missing
    
    * change sw field names from cice
    
    * Add capablilty to build the CMEPS mediator in place of the
    NEMS mediator using 'ifdef CMEPS' conditionals in
    module_EARTH_GRID_COMP.F90 If CMEPS is built, the NUOPC field
    contained in parm/fd.yaml will be used.
    DeniseWorthen authored Feb 27, 2020
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Commits on Mar 4, 2020

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Commits on Mar 11, 2020

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Commits on Mar 18, 2020

  1. hera.gnu config & selective merge of UFS public release hotfix to dev…

    …elop (fixes problem with MPI_Comm_Split in openmpi when hash is negative) (NOAA-EMC#43)
    
    * fixes problem with MPI_Comm_Split in openmpi when hash is negative
    
    * removed redundant check on hash > 0
    
    * hera.gnu config
    
    Co-authored-by: Mark A. Potts <mark.potts@noaa.gov>
    Co-authored-by: Mark Potts <mpotts@redlineperf.com>
    3 people authored Mar 18, 2020
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Commits on Mar 27, 2020

  1. Merge release hotfix into develop (NOAA-EMC#45)

    * Set default values for model_configure variables (NOAA-EMC#18)
    
    RUN_CONTINUE = .false.
     ENS_SPS = .false.
     TOTAL_MEMBER = 1
    
    * fixes problem with MPI_Comm_Split in openmpi when hash is negative
    
    * removed redundant check on hash > 0
    
    * Add GNU LPGL (NOAA-EMC#32)
    
    * Add NEMS documentation (NOAA-EMC#33)
    
    * Add nems documentation in doc directory
    
    *Include in .gitignore NEMS/doc/html/ and NEMS/doc/webpage.tar.gz
    *Remove milestones.dox which is no longer needed
    *Modify Makefile to include doxygen command on Hera
    *Remove in prep_inputs.py two functions related to milestones
    
    * Remove webpage.tar.gz file
    
    * Update NEMS documentation
    
    *Add Doxyfile in NEMS/.gitignore
    
    * Update based on documentation meeting
    
    * Updates to the documentation (NOAA-EMC#35)
    
    * Documentation update (NOAA-EMC#36)
    
    * Modify license file (NOAA-EMC#37)
    
    * Modify license file
    
    * Fix typo in license
    
    Co-authored-by: Dusan Jovic <48258889+DusanJovic-NOAA@users.noreply.github.com>
    Co-authored-by: Mark A. Potts <mark.potts@noaa.gov>
    Co-authored-by: Mark Potts <mpotts@redlineperf.com>
    Co-authored-by: Mark Potts <33099090+mark-a-potts@users.noreply.github.com>
    Co-authored-by: arun chawla <49994787+arunchawla-NOAA@users.noreply.github.com>
    6 people authored Mar 27, 2020
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  2. Port 2 hera to develop (NOAA-EMC#46)

    * Point NEMS to a new pyprodutil branch which merges port-2-hera into develop
    
    * Point NEMS to NOAA-EMC/NCEPLIBS-pyprodutil develop
    MinsukJi-NOAA authored Mar 27, 2020
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Commits on Mar 30, 2020

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Commits on Apr 4, 2020

  1. add s4 rules

    aerorahul committed Apr 4, 2020
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Commits on Apr 14, 2020

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