fix(config/config.yaml) add threads for replace_rg and also add comme…

…nts for min_dp setting
NCI-CGR · Nov 5, 2024 · abb9b4f · abb9b4f
1 parent 874c965
commit abb9b4f
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/config/config.yaml b/config/config.yaml
@@ -42,10 +42,10 @@ call_dnm:
   interval: "ref/hg38.wgs_interval.bed"
   dv:
     min_gq: 3
-    min_dp: 20
+    min_dp: 20 # this is for 80X
   hc:
     min_gq: 20
-    min_dp: 30
+    min_dp: 30 # this is for 80X
 
 phasing:
   window_size: 10000
@@ -100,6 +100,7 @@ threads:
   svimmer: 4
   graphtyper: 40
   smoove: 20
+  replace_rg: 4