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transport on potential density surfaces #154
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Is this needed for monthly or just annual? |
Also, I'm going to use _rho2 suffix for the file names, unless that's been set by CMIP? |
monthly is needed. Name for the file names are not specified. |
monthly is needed for all overturning transport diagnostics, including GM and submeso. |
We need to decide on range and resolution for density space diagnostics... |
This is what we used in MOM5 for years, based on rho2000. It likely is sufficient for our OM4 simulations. The delta(rho) are evenly spaced into 80 layers. &ocean_density_nml |
Actually, I was thinking about reducing it to fewer levels for the sake of
space. This is monthly output.
…--
Dr Alistair Adcroft (Alistair.Adcroft@noaa.gov)
Princeton University Tel: (609) 987-5073
NOAA/GFDL, 201 Forrestal Road, Princeton, NJ 08540
On Tue, Sep 19, 2017 at 6:57 AM, Stephen Griffies ***@***.***> wrote:
This is what we used in MOM5 for years, based on rho2000. It likely is
sufficient for our OM4 simulations. The delta(rho) are evenly spaced into
80 layers.
&ocean_density_nml
potrho_min=1028.0
potrho_max=1038.0
layer_nk=80
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<#154 (comment)>,
or mute the thread
<https://github.com/notifications/unsubscribe-auth/AFlo86MwIR38bHnfp63S2GTkzMV2ls5Kks5sj54fgaJpZM4PYId_>
.
|
My concern with reducing the density classes is that we will miss the subtle issues related to deep overturning cells. To capture these cells with a uniform delta(rho) generally requires many layers. If you wish to test nonlinear delta(rho), that may be fruitful, but it will take some testing. If archive space is an issue (when is it not), I would strongly prefer annual means for all of the overturning diagnostics, keeping no less than 80 delta(rho) bins. I do not think it wise to coarsen in density class space without testing. |
- Updates available_diags - Merge NOAA-GFDL/MOM6@a4cc554 closes #162 - Merge NOAA-GFDL/MOM6@950718f updates #165 and #154 - NOAA-GFDL/MOM6@a2101cf Merge branch 'adcroft-fix_uhml_units' into dev/gfdl - NOAA-GFDL/MOM6@11ad230 Add units for uhml,vhml - NOAA-GFDL/MOM6@fc732ac Merge pull request #604 from breichl/user/bgr/EPBL_OSBL_DIAG - NOAA-GFDL/MOM6@c4ebae8 Merge pull request #606 from adcroft/diag_rfcn1 - NOAA-GFDL/MOM6@2350dba Merge pull request #605 from NOAA-GFDL/halo_update_clock - NOAA-GFDL/MOM6@8dada7e Fixes allocation issue for diagnostics in rho coords - NOAA-GFDL/MOM6@4ac331c Merge pull request #603 from ashao/remapped_boundary_flux_tendencies - NOAA-GFDL/MOM6@a204620 Use clock argument in halo update calls - NOAA-GFDL/MOM6@9be672e Add cmor description to ePBL_h_ML diagnostic - NOAA-GFDL/MOM6@4cfab37 +Added optional clock arg to halo update routines - NOAA-GFDL/MOM6@950718f Merge pull request #601 from adcroft/fix_units_vhml_vhgm - NOAA-GFDL/MOM6@78724e3 Merge pull request #600 from nikizadehgfdl/user/nnz/fix_OMP_issue_similar_588 - NOAA-GFDL/MOM6@a8f0b99 Change units of parameterized transport to kg s-1 - NOAA-GFDL/MOM6@a4cc554 Merge pull request #597 from ashao/update_grid_after_boundaryfluxes - NOAA-GFDL/MOM6@f9f97de Merge pull request #598 from NOAA-GFDL/input_filename_F - NOAA-GFDL/MOM6@baa8039 Merge pull request #599 from adcroft/diag_rfcn1 - NOAA-GFDL/MOM6@2987394 Progress towards conservative boundary flux tendencies - NOAA-GFDL/MOM6@eaa407a Fix OMP issue similar to 588 - NOAA-GFDL/MOM6@5cf60bf Generate profile for diagnostic density coordinate - NOAA-GFDL/MOM6@9006d33 Removed trailing white space - NOAA-GFDL/MOM6@3f10926 +Added 'F' input_filename option - NOAA-GFDL/MOM6@a972015 Fix for nonzero remapped vertical diffusion tendencies - NOAA-GFDL/MOM6@c4f6b72 Reordered diagnostic calls at end of step_MOM
@StephenGriffies, @adcroft - Is there any sample output that you can point me to for testing? |
…ate-ncar-2020-08-11 - dev/NCAR to dev/master - NOAA-GFDL/MOM6@eb57e51f5 Merge pull request #1176 from gustavo-marques/dev-master-candidate-ncar-2020-08-11 - NOAA-GFDL/MOM6@2946903bc Fix one more letter case to follow MOM6 convention - NOAA-GFDL/MOM6@e3bc47a8d Fix letter case to follow MOM6 convention - NOAA-GFDL/MOM6@17936f3fd Add modifications suggested by Bob Hallberg - NOAA-GFDL/MOM6@ab9386c66 In do-loops, use uppercase K index for variables discretized on interfaces - NOAA-GFDL/MOM6@287281cf6 Remove unnecessary present(num_rest_files) condition - NOAA-GFDL/MOM6@6331da102 Remove (:,:) after 2-d variable declariation - NOAA-GFDL/MOM6@608f4bfb8 Merge branch 'dev/master' into dev-master-candidate-ncar-2020-08-11 - NOAA-GFDL/MOM6@aa8ce213f Merge pull request NOAA-GFDL#156 from NCAR/fix_multi_restart - NOAA-GFDL/MOM6@648bb1ce8 make mct cap be able to read multiple restart files from rpointer - NOAA-GFDL/MOM6@829aadea9 make mct cap be able to write multiple restart files to rpointer - NOAA-GFDL/MOM6@bba3e91b5 increase nuopc cap restart filename length - NOAA-GFDL/MOM6@0a5515b3d increase restart filename lengths - NOAA-GFDL/MOM6@4c91ae3ac add filename length check - NOAA-GFDL/MOM6@7a2256c50 correct restart file suffix index - NOAA-GFDL/MOM6@4c6090010 read/write multiple restart filenames from/to rpointer files - NOAA-GFDL/MOM6@ff27ad560 add num_rest_files to ocean_model_restart - NOAA-GFDL/MOM6@2fe90f2fe retrieve num_rest_files from save_restart - NOAA-GFDL/MOM6@330d7c45a Merge pull request NOAA-GFDL#155 from gustavo-marques/LBD_improvements_jun2020 - NOAA-GFDL/MOM6@388b100c8 Fix default zeta_bot values - NOAA-GFDL/MOM6@3698c4055 Merge pull request NOAA-GFDL#154 from gustavo-marques/restart_nuopc - NOAA-GFDL/MOM6@0c98fa994 Merge pull request NOAA-GFDL#153 from gustavo-marques/add_calls_time_interp_external_init - NOAA-GFDL/MOM6@bb222c875 Merge pull request NOAA-GFDL#152 from gustavo-marques/add_diagnostics - NOAA-GFDL/MOM6@ca86bad51 Remove trailing space - NOAA-GFDL/MOM6@8fdcd9048 Improve documentation and changed default method - NOAA-GFDL/MOM6@7f478aa3e Add option to apply linear decay at the base of hbl - NOAA-GFDL/MOM6@aed316cd7 Merge branch 'dev/ncar' into restart_nuopc - NOAA-GFDL/MOM6@abb10ed4c Add calls to time_interp_external_init - NOAA-GFDL/MOM6@473c3f47b Remove unused module - NOAA-GFDL/MOM6@a69aea961 Add new diagnostics - NOAA-GFDL/MOM6@4041cc90b Fix bug when applying ND only in the interior - NOAA-GFDL/MOM6@fd68ffa0b Merge pull request NOAA-GFDL#151 from gustavo-marques/merge-dev-master-candidate-2020-05-15 - NOAA-GFDL/MOM6@97547426a Fix OMP directives broken by merge - NOAA-GFDL/MOM6@532e65ad5 undo OMP changes in MOM_EOS - NOAA-GFDL/MOM6@b34478800 undo indent change from conflict resolve - NOAA-GFDL/MOM6@2f44ca7ce correct conflict resolve in KPP - NOAA-GFDL/MOM6@81805cc99 Merge branch 'dev/ncar' into merge-dev-master-candidate-2020-05-15 - NOAA-GFDL/MOM6@85f4dc09b Merge pull request NOAA-GFDL#150 from NCAR/omp_performance - NOAA-GFDL/MOM6@4755458e3 Merge branch 'dev-master-candidate-2020-05-15-patch1' into merge-dev-master-candidate-2020-05-15 - NOAA-GFDL/MOM6@fab21a749 Fixes an integer-kind mismatch in MOM_random, seed_from_time() - NOAA-GFDL/MOM6@6d5a5f90b Merge branch 'dev-master-candidate-2020-05-15' into merge-dev-master-candidate-2020-05-15 - NOAA-GFDL/MOM6@02f5a8cf3 Merge pull request NOAA-GFDL#149 from gustavo-marques/fix_tidal_mixing - NOAA-GFDL/MOM6@c42d104c5 Merge pull request NOAA-GFDL#148 from gustavo-marques/leith_improvements - NOAA-GFDL/MOM6@809593cb4 Merge branch 'dev/ncar' into leith_improvements - NOAA-GFDL/MOM6@4e54ad531 Merge pull request NOAA-GFDL#147 from gustavo-marques/biharmonic_grid_Re - NOAA-GFDL/MOM6@c06515f19 Add tidal diffusivities (Kd_tidal) into Kd_int - NOAA-GFDL/MOM6@933b09abe Remove OMP directive that came with cherry-picking - NOAA-GFDL/MOM6@7d228f73a Add missing OMP directives - NOAA-GFDL/MOM6@b412fde96 Fix Leith_Ah - NOAA-GFDL/MOM6@c53525eae Clean QG_Leith - NOAA-GFDL/MOM6@48310e3d6 eliminate omp parallel open/close in to int_density_dz_generic_plm - NOAA-GFDL/MOM6@98f5a8d97 add omp directives to int_density_dz_generic_plm - NOAA-GFDL/MOM6@1165a61ba further refactor smoothing subroutine - NOAA-GFDL/MOM6@e47e8b712 uncomment KPP clocks - NOAA-GFDL/MOM6@e5fcc694d remove OMP enclosing get_BLD call - NOAA-GFDL/MOM6@1e7fa519b add KPP timing clocks and omp directives - NOAA-GFDL/MOM6@cd00022b5 Fix OMP calls - NOAA-GFDL/MOM6@e3cbcbbd0 Fix openmp directives - NOAA-GFDL/MOM6@e955c6d9a Fix openmp directives - NOAA-GFDL/MOM6@3fb86e3ed Avoid division by zero - NOAA-GFDL/MOM6@b609dead2 Fix indices in KE calculation - NOAA-GFDL/MOM6@49ab54ab5 move pass_var in KPP smoothing outside the do-loop - NOAA-GFDL/MOM6@65f36d768 Add diags for Lapl. and Bihar grid Reynolds #s - NOAA-GFDL/MOM6@6cf28bf15 Add option to scale AH via a biharmonic Reynolds # - NOAA-GFDL/MOM6@3dd70fe71 remove unnecessary kOBL computation - NOAA-GFDL/MOM6@2aa10917d optimize barotropic timestepping openmp - NOAA-GFDL/MOM6@01f7c452e uncomment omp in barotropic solver - NOAA-GFDL/MOM6@0a2bb505f uncomment omp directive for KPP_compute_BLD - NOAA-GFDL/MOM6@e089a159f bug fix for cesm when restart_option is none - NOAA-GFDL/MOM6@1a6411f0c added changes to unify cap with EMC changes - NOAA-GFDL/MOM6@2fe522454 updates to clean up differences between nems and cmeps for restarts
- dev/master -> dev/gfdl - NOAA-GFDL/MOM6@fae989582 Merge branch 'Hallberg-NOAA-merge_ncar_gfdl' into dev/gfdl - NOAA-GFDL/MOM6@97793be50 Merge branch 'dev/master' into merge_ncar_gfdl - NOAA-GFDL/MOM6@eb57e51f5 Merge pull request #1176 from gustavo-marques/dev-master-candidate-ncar-2020-08-11 - NOAA-GFDL/MOM6@c32db2594 Merge pull request #1193 from adcroft/brankart - NOAA-GFDL/MOM6@365dd7c32 Merge branch 'dev/gfdl' into brankart - NOAA-GFDL/MOM6@413427889 Merge branch 'Hallberg-NOAA-fix_memory_macros' into dev/gfdl - NOAA-GFDL/MOM6@71f6921a1 Merge branch 'fix_memory_macros' of https://github.com/Hallberg-NOAA/MOM6 into Hallberg-NOAA-fix_memory_macros - NOAA-GFDL/MOM6@edff25e02 Rename intermediate variable in Stanley PGF parameterization - NOAA-GFDL/MOM6@b155bf36b (*)Correct the use of memory macros for arguments - NOAA-GFDL/MOM6@4dbc12697 Adds land masking of thicknesses in SGS estimate - NOAA-GFDL/MOM6@63a2e2ae8 Merge branch 'dev/gfdl' into brankart - NOAA-GFDL/MOM6@54cf60d99 Merge branch 'dev/gfdl' into brankart - NOAA-GFDL/MOM6@995e42232 Fix spelling in comments and line length - NOAA-GFDL/MOM6@2946903bc Fix one more letter case to follow MOM6 convention - NOAA-GFDL/MOM6@e3bc47a8d Fix letter case to follow MOM6 convention - NOAA-GFDL/MOM6@17936f3fd Add modifications suggested by Bob Hallberg - NOAA-GFDL/MOM6@ab9386c66 In do-loops, use uppercase K index for variables discretized on interfaces - NOAA-GFDL/MOM6@287281cf6 Remove unnecessary present(num_rest_files) condition - NOAA-GFDL/MOM6@6331da102 Remove (:,:) after 2-d variable declariation - NOAA-GFDL/MOM6@608f4bfb8 Merge branch 'dev/master' into dev-master-candidate-ncar-2020-08-11 - NOAA-GFDL/MOM6@aa8ce213f Merge pull request #156 from NCAR/fix_multi_restart - NOAA-GFDL/MOM6@648bb1ce8 make mct cap be able to read multiple restart files from rpointer - NOAA-GFDL/MOM6@829aadea9 make mct cap be able to write multiple restart files to rpointer - NOAA-GFDL/MOM6@bba3e91b5 increase nuopc cap restart filename length - NOAA-GFDL/MOM6@0a5515b3d increase restart filename lengths - NOAA-GFDL/MOM6@4c91ae3ac add filename length check - NOAA-GFDL/MOM6@7a2256c50 correct restart file suffix index - NOAA-GFDL/MOM6@4c6090010 read/write multiple restart filenames from/to rpointer files - NOAA-GFDL/MOM6@ff27ad560 add num_rest_files to ocean_model_restart - NOAA-GFDL/MOM6@2fe90f2fe retrieve num_rest_files from save_restart - NOAA-GFDL/MOM6@f549dd011 Use thickness weighted variance estimate in PGF - NOAA-GFDL/MOM6@859abbd36 Add diagnostic of SGS T variance in Stanley PGF - NOAA-GFDL/MOM6@330d7c45a Merge pull request #155 from gustavo-marques/LBD_improvements_jun2020 - NOAA-GFDL/MOM6@388b100c8 Fix default zeta_bot values - NOAA-GFDL/MOM6@3698c4055 Merge pull request #154 from gustavo-marques/restart_nuopc - NOAA-GFDL/MOM6@0c98fa994 Merge pull request #153 from gustavo-marques/add_calls_time_interp_external_init - NOAA-GFDL/MOM6@bb222c875 Merge pull request #152 from gustavo-marques/add_diagnostics - NOAA-GFDL/MOM6@ca86bad51 Remove trailing space - NOAA-GFDL/MOM6@8fdcd9048 Improve documentation and changed default method - NOAA-GFDL/MOM6@7f478aa3e Add option to apply linear decay at the base of hbl - NOAA-GFDL/MOM6@aed316cd7 Merge branch 'dev/ncar' into restart_nuopc - NOAA-GFDL/MOM6@abb10ed4c Add calls to time_interp_external_init - NOAA-GFDL/MOM6@473c3f47b Remove unused module - NOAA-GFDL/MOM6@a69aea961 Add new diagnostics - NOAA-GFDL/MOM6@4041cc90b Fix bug when applying ND only in the interior - NOAA-GFDL/MOM6@fd68ffa0b Merge pull request #151 from gustavo-marques/merge-dev-master-candidate-2020-05-15 - NOAA-GFDL/MOM6@97547426a Fix OMP directives broken by merge - NOAA-GFDL/MOM6@532e65ad5 undo OMP changes in MOM_EOS - NOAA-GFDL/MOM6@b34478800 undo indent change from conflict resolve - NOAA-GFDL/MOM6@2f44ca7ce correct conflict resolve in KPP - NOAA-GFDL/MOM6@81805cc99 Merge branch 'dev/ncar' into merge-dev-master-candidate-2020-05-15 - NOAA-GFDL/MOM6@85f4dc09b Merge pull request #150 from NCAR/omp_performance - NOAA-GFDL/MOM6@4755458e3 Merge branch 'dev-master-candidate-2020-05-15-patch1' into merge-dev-master-candidate-2020-05-15 - NOAA-GFDL/MOM6@fab21a749 Fixes an integer-kind mismatch in MOM_random, seed_from_time() - NOAA-GFDL/MOM6@6d5a5f90b Merge branch 'dev-master-candidate-2020-05-15' into merge-dev-master-candidate-2020-05-15 - NOAA-GFDL/MOM6@02f5a8cf3 Merge pull request #149 from gustavo-marques/fix_tidal_mixing - NOAA-GFDL/MOM6@c42d104c5 Merge pull request #148 from gustavo-marques/leith_improvements - NOAA-GFDL/MOM6@809593cb4 Merge branch 'dev/ncar' into leith_improvements - NOAA-GFDL/MOM6@4e54ad531 Merge pull request #147 from gustavo-marques/biharmonic_grid_Re - NOAA-GFDL/MOM6@c06515f19 Add tidal diffusivities (Kd_tidal) into Kd_int - NOAA-GFDL/MOM6@933b09abe Remove OMP directive that came with cherry-picking - NOAA-GFDL/MOM6@7d228f73a Add missing OMP directives - NOAA-GFDL/MOM6@b412fde96 Fix Leith_Ah - NOAA-GFDL/MOM6@c53525eae Clean QG_Leith - NOAA-GFDL/MOM6@48310e3d6 eliminate omp parallel open/close in to int_density_dz_generic_plm - NOAA-GFDL/MOM6@98f5a8d97 add omp directives to int_density_dz_generic_plm - NOAA-GFDL/MOM6@1165a61ba further refactor smoothing subroutine - NOAA-GFDL/MOM6@e47e8b712 uncomment KPP clocks - NOAA-GFDL/MOM6@e5fcc694d remove OMP enclosing get_BLD call - NOAA-GFDL/MOM6@1e7fa519b add KPP timing clocks and omp directives - NOAA-GFDL/MOM6@cd00022b5 Fix OMP calls - NOAA-GFDL/MOM6@e3cbcbbd0 Fix openmp directives - NOAA-GFDL/MOM6@e955c6d9a Fix openmp directives - NOAA-GFDL/MOM6@3fb86e3ed Avoid division by zero - NOAA-GFDL/MOM6@b609dead2 Fix indices in KE calculation - NOAA-GFDL/MOM6@49ab54ab5 move pass_var in KPP smoothing outside the do-loop - NOAA-GFDL/MOM6@65f36d768 Add diags for Lapl. and Bihar grid Reynolds #s - NOAA-GFDL/MOM6@6cf28bf15 Add option to scale AH via a biharmonic Reynolds # - NOAA-GFDL/MOM6@3dd70fe71 remove unnecessary kOBL computation - NOAA-GFDL/MOM6@2aa10917d optimize barotropic timestepping openmp - NOAA-GFDL/MOM6@01f7c452e uncomment omp in barotropic solver - NOAA-GFDL/MOM6@0a2bb505f uncomment omp directive for KPP_compute_BLD - NOAA-GFDL/MOM6@e089a159f bug fix for cesm when restart_option is none - NOAA-GFDL/MOM6@1a6411f0c added changes to unify cap with EMC changes - NOAA-GFDL/MOM6@2fe522454 updates to clean up differences between nems and cmeps for restarts
- NOAA-GFDL/SIS2@ae959ed Merge pull request #154 from Hallberg-NOAA/fix_Landfast - NOAA-GFDL/SIS2@475ace3 +(*)Fixed the landfast ice algorithm
For CMIP6, we need to diagnose horizontal transport on sigma2000. Are we ready to exercise the regridding routine to do this?
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