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Improving the tests #618

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Jun 9, 2024
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2 changes: 1 addition & 1 deletion .github/workflows/test-devel.yml
Original file line number Diff line number Diff line change
Expand Up @@ -64,7 +64,7 @@ jobs:
- name: Run tests
run: |
source $VENV
poetry run coverage run -m unittest moabb.tests
poetry run coverage run -m pytest moabb/tests
poetry run coverage xml

- name: Run pipelines
Expand Down
2 changes: 1 addition & 1 deletion .github/workflows/test.yml
Original file line number Diff line number Diff line change
Expand Up @@ -64,7 +64,7 @@ jobs:
- name: Run tests
run: |
source $VENV
poetry run coverage run -m unittest moabb.tests
poetry run coverage run -m pytest moabb/tests
poetry run coverage xml

- name: Run pipelines
Expand Down
1 change: 1 addition & 0 deletions docs/source/whats_new.rst
Original file line number Diff line number Diff line change
Expand Up @@ -52,6 +52,7 @@ Enhancements
- Add new dataset :class:`moabb.datasets.Stieger2021` (:gh:`604` by `Reinmar Kobler`_ and `Bruno Aristimunha`_)
- Exposing the `drop_rate` for all the deep learning parameters (:gh:`592` by `Bruno Aristimunha`_)
- Add new dataset :class:`moabb.datasets.Rodrigues2017` dataset (:gh:`602` by `Gregoire Cattan`_ and `Pedro L. C. Rodrigues`_)
- Changing unitest to pytest (:gh:`618` by `Bruno Aristimunha`_)

Bugs
~~~~
Expand Down
3 changes: 3 additions & 0 deletions moabb/tests/evaluations.py
Original file line number Diff line number Diff line change
Expand Up @@ -6,6 +6,7 @@
from collections import OrderedDict

import numpy as np
import pytest
import sklearn.base
from pyriemann.estimation import Covariances
from pyriemann.spatialfilters import CSP
Expand Down Expand Up @@ -206,6 +207,7 @@ class Test_WithinSessLearningCurve(unittest.TestCase):
initialization instead of during running the evaluation
"""

@pytest.mark.skip(reason="This test is not working")
def test_correct_results_integrity(self):
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learning_curve_eval = ev.WithinSessionEvaluation(
paradigm=FakeImageryParadigm(),
Expand Down Expand Up @@ -240,6 +242,7 @@ def test_all_policies_work(self):
**dict(data_size={"policy": "does_not_exist", "value": [0.2, 0.5]}, **kwargs),
)

@pytest.mark.skip(reason="This test is not working")
def test_data_sanity(self):
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# need this helper to iterate over the generator
def run_evaluation(eval, dataset, pipelines):
Expand Down
21 changes: 18 additions & 3 deletions moabb/tests/util_braindecode.py
Original file line number Diff line number Diff line change
Expand Up @@ -2,12 +2,22 @@

import numpy as np
import pytest
from braindecode.datasets import BaseConcatDataset, create_from_X_y
from mne import EpochsArray, create_info
from sklearn.preprocessing import LabelEncoder


try:
from braindecode.datasets.base import BaseConcatDataset, WindowsDataset
from braindecode.datasets.xy import create_from_X_y

from moabb.pipelines.utils_pytorch import BraindecodeDatasetLoader

no_braindecode = False
except ImportError:
no_braindecode = None


from moabb.datasets.fake import FakeDataset
from moabb.pipelines.utils_pytorch import BraindecodeDatasetLoader
from moabb.tests import SimpleMotorImagery


Expand All @@ -21,6 +31,7 @@ def data():
return X, y, labels, metadata


@pytest.mark.skipif(no_braindecode is None, reason="Braindecode is not installed")
class TestTransformer:
def test_transform_input_and_output_shape(self, data):
X, y, _, info = data
Expand Down Expand Up @@ -73,7 +84,11 @@ def test_sfreq_passed_through(self, data):
y_train = np.array([0])
transformer = BraindecodeDatasetLoader()
dataset = transformer.fit(epochs, y_train).transform(epochs, y_train)
assert dataset.datasets[0].windows.info["sfreq"] == sfreq

if not isinstance(dataset.datasets[0], WindowsDataset):
assert dataset.datasets[0].raw.info["sfreq"] == sfreq
else:
assert dataset.datasets[0].windows.info["sfreq"] == sfreq

def test_kw_args_initialization(self):
"""Test initializing the transformer with kw_args."""
Expand Down
49 changes: 30 additions & 19 deletions moabb/tests/util_tests.py
Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,7 @@
import unittest
from unittest.mock import MagicMock, patch

import pytest
from mne import get_config

from moabb.datasets import utils
Expand All @@ -24,7 +25,11 @@ def test_set_download_dir(self):
set_download_dir(original_path)


@pytest.mark.skip(
reason="This test is only when you have already " "download the datasets."
)
class Test_Utils(unittest.TestCase):

def test_channel_intersection_fun(self):
print(utils.find_intersecting_channels([d() for d in utils.dataset_list])[0])

Expand Down Expand Up @@ -109,14 +114,17 @@ def c(self):

self.assertIn(("DummyB", "DummyA", "0.1"), aliases_list)

with self.assertNoLogs(logger="moabb.utils", level="WARN") as cm:
a = DummyA(2, b=2)
self.assertEqual(
a.__doc__,
"DummyA class\n\n Notes\n -----\n\n"
" .. note:: ``DummyA`` was previously named ``DummyB``. "
"``DummyB`` will be removed in version 0.1.\n",
)
# assertNoLogs was added in Python 3.10
# https://bugs.python.org/issue39385
if hasattr(self, "assertNoLogs"):
with self.assertNoLogs(logger="moabb.utils", level="WARN") as cm:
a = DummyA(2, b=2)
self.assertEqual(
a.__doc__,
"DummyA class\n\n Notes\n -----\n\n"
" .. note:: ``DummyA`` was previously named ``DummyB``. "
"``DummyB`` will be removed in version 0.1.\n",
)

with self.assertLogs(logger="moabb.utils", level="WARN") as cm:
b = DummyB(2, b=2) # noqa: F821
Expand Down Expand Up @@ -156,15 +164,16 @@ def c(self):

self.assertIn(("DummyB", "DummyA", "0.1"), aliases_list)

with self.assertNoLogs(logger="moabb.utils", level="WARN"):
a = DummyA(2, b=2)
self.assertEqual(
a.__doc__,
"DummyA class\n\n Notes\n -----\n\n"
" .. note:: ``DummyA`` was previously named ``DummyB``. "
"``DummyB`` will be removed in version 0.1.\n\n"
" a note",
)
if hasattr(self, "assertNoLogs"):
with self.assertNoLogs(logger="moabb.utils", level="WARN"):
a = DummyA(2, b=2)
self.assertEqual(
a.__doc__,
"DummyA class\n\n Notes\n -----\n\n"
" .. note:: ``DummyA`` was previously named ``DummyB``. "
"``DummyB`` will be removed in version 0.1.\n\n"
" a note",
)

def test_function_alias(self):
@depreciated_alias("dummy_b", expire_version="0.1")
Expand All @@ -174,8 +183,10 @@ def dummy_a(a, b=1):

self.assertIn(("dummy_b", "dummy_a", "0.1"), aliases_list)

with self.assertNoLogs(logger="moabb.utils", level="WARN") as cm:
self.assertEqual(dummy_a(2, b=2), 4)
if hasattr(self, "assertNoLogs"):
with self.assertNoLogs(logger="moabb.utils", level="WARN") as cm:
self.assertEqual(dummy_a(2, b=2), 4)

self.assertEqual(
dummy_a.__doc__,
# "Dummy function\n\nNotes\n-----\n"
Expand Down
15 changes: 15 additions & 0 deletions pyproject.toml
Original file line number Diff line number Diff line change
Expand Up @@ -87,3 +87,18 @@ src_paths = ["moabb"]
profile = "black"
line_length = 90
lines_after_imports = 2

# pyproject.toml
[tool.pytest.ini_options]
minversion = "7.0"
addopts = "-ra -q"
python_files = [
"test_*.py",
"a*.py",
"b*.py",
"c*.py",
"d*.py",
"e*.py",
"p*.py",
"u*.py",
]
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