Add script to update schema files and update schema files #28
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Version of the scripts based of NeurodataWithoutBorders/pynwb@a9533a8
Run the UpdateFromUpstream.sh script to extract upstream nwb-schema using the following shell commands. $ git archive --prefix=upstream-nwb-schema/ e1f52504 -- core | tar x Initial import of e1f52504b3c3b050ab54bb6fbf0e6a818f537c0f
…update-schema * upstream-nwb-schema: nwb-schema 2018-04-26 (e1f52504) # Conflicts: # schema/core/nwb.base.yaml # schema/core/nwb.ecephys.yaml # schema/core/nwb.epoch.yaml # schema/core/nwb.file.yaml # schema/core/nwb.misc.yaml # schema/core/nwb.ogen.yaml # schema/core/nwb.ophys.yaml
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This PR introduces a script similar to what was done in NeurodataWithoutBorders/pynwb#506 Worth noting that schema files used in matnwb were updated in 7947b3d to match the latest version available in nwb-schema project. That said, commit 6186d0b reverted some of the change. These updates specific to matnwb can be viewed looking at 0771f98 associated with this PR. It would be great to either:
If some of these differences are required, we could also make use of a |
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I'd like to update the schema in matnwb and keep it up to date with pynwb and nwb-schema. Is that what this PR is trying to do? I tried generating the core using the schema in the latest pynwb dev branch: generateCore('path_to/pynwb/src/pynwb/data/nwb.namespace.yaml');
nwbRead('path_to/resting_state.nwb')and it worked without an error :-) |
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nudge @nclack |
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