python: updates and fixes

[dotlambda]

Motivation for this change

Fix some broken Python packages from https://hydra.nixos.org/eval/1434362#tabs-still-fail

Things done

• Tested using sandboxing (nix.useSandbox on NixOS, or option build-use-sandbox in nix.conf on non-NixOS)
• Built on platform(s)
  • NixOS
  • macOS
  • other Linux distributions
• Tested via one or more NixOS test(s) if existing and applicable for the change (look inside nixos/tests)
• Tested compilation of all pkgs that depend on this change using nix-shell -p nox --run "nox-review wip"
• Tested execution of all binary files (usually in ./result/bin/)
• Fits CONTRIBUTING.md.

---

/cc bibtexparser maintainer @FRidh
/cc curtsies maintainer @flokli
/cc dbf maintainer @vrthra
/cc prov maintainer @ashgillman

[ashgillman]

Thanks. Prov changes look good to me.

Looking through that list, a number of packages I work with have failed due to scipy taking too long.

[dotlambda]

One of the commtis actually replaces python-termstyle by termstyle, which is a good thing in my opinion.
However, I still have to fix green, which depends on python-termstyle.

[FRidh]

Hydra job at https://hydra.nixos.org/eval/1434873 for ae66b64

[dotlambda]

Didn't you fix natsort somewhere?

[dotlambda]

I think I'm done here for now. Can you start another Hydra job?

[dotlambda]

@rybern I had to mark pomegranate as broken. See jmschrei/pomegranate#209.

[FRidh]

Another job at https://hydra.nixos.org/eval/1435157. Note that I rebased on staging.

[dotlambda]

@rycee Just a ping because I fixed pytrainer.

@FRidh Most of the new failures are due to #35301. I think we should merge this one and I'll open a new PR as soon as I have accumulated some fixes again.

[dotlambda]

@garbas @domenkozar Is it okay that I removed mysql_connector_repackaged? It is currently broken and grepping through Nixpkgs didn't yield any dependents. You can use mysql-connector instead.

[GrahamcOfBorg]

Failure on x86_64-linux (full log)

Partial log (click to expand)

cannot build derivation ‘/nix/store/3gwyapiz7s2j8f3d0x51kfypabcl34pl-gpsbabel-1.5.4.drv’: 4 dependencies couldn't be built
cannot build derivation ‘/nix/store/wacsmfj8xhc3ic3axvma0b6421v1d4fq-gtk+-2.24.32.drv’: 18 dependencies couldn't be built
cannot build derivation ‘/nix/store/pb1hbr7ivlgjwqk0cphviqszphr905fa-python2.7-urllib3-1.22.drv’: 13 dependencies couldn't be built
cannot build derivation ‘/nix/store/x5p6hwb3dkk4x0gkfw1dm211lw620d2p-libglade-2.6.4.drv’: 7 dependencies couldn't be built
cannot build derivation ‘/nix/store/yqk3fnbgq6zgn1ww5155b9jr5hq38pb6-python2.7-requests-2.18.4.drv’: 12 dependencies couldn't be built
cannot build derivation ‘/nix/store/db8ijlh8ymnmg7b9mnbmx990amikrch3-python2.7-Sphinx-1.7.0.drv’: 25 dependencies couldn't be built
cannot build derivation ‘/nix/store/3aa05csxd3w9sksjdl168qj53kbcangn-python2.7-pygtk-2.24.0.drv’: 12 dependencies couldn't be built
cannot build derivation ‘/nix/store/jqd6q9s9n0g6z7dmg4xbgjwran3r0j3g-python2.7-matplotlib-2.1.2.drv’: 25 dependencies couldn't be built
cannot build derivation ‘/nix/store/anm0yfdx10bvyr1q6qb7m25s9smb8x5r-pytrainer-1.11.0.drv’: 15 dependencies couldn't be built
error: build of ‘/nix/store/anm0yfdx10bvyr1q6qb7m25s9smb8x5r-pytrainer-1.11.0.drv’ failed

[GrahamcOfBorg]

Failure on aarch64-linux (full log)

Partial log (click to expand)

post-installation fixup
shrinking RPATHs of ELF executables and libraries in /nix/store/595nmgjslsfybavzgfisvfn21h0sqda9-gpsbabel-1.5.4
shrinking /nix/store/595nmgjslsfybavzgfisvfn21h0sqda9-gpsbabel-1.5.4/bin/gpsbabel
strip is /nix/store/ggjc1mfsicyq31xlg5d51hl9lc21wxnv-binutils-2.28.1/bin/strip
stripping (with command strip and flags -S) in /nix/store/595nmgjslsfybavzgfisvfn21h0sqda9-gpsbabel-1.5.4/bin
patching script interpreter paths in /nix/store/595nmgjslsfybavzgfisvfn21h0sqda9-gpsbabel-1.5.4
checking for references to /build in /nix/store/595nmgjslsfybavzgfisvfn21h0sqda9-gpsbabel-1.5.4...
postPatchMkspecs
cannot build derivation '/nix/store/gncihgp3azv66gy3gjg5hsv4z7m551kj-pytrainer-1.11.0.drv': 1 dependencies couldn't be built
�[31;1merror:�[0m build of '/nix/store/gncihgp3azv66gy3gjg5hsv4z7m551kj-pytrainer-1.11.0.drv' failed

[garbas]

@dotlambda ok by me.