Skip to content

Commit

Permalink
Merge pull request #84 from Ouranosinc/new-docker-full-build
Browse files Browse the repository at this point in the history
New docker full build to get latest RavenPy-0.6.0, Xclim-0.28.0 and latest of everything else

# Overview

Relevant changes:
```diff
<   - ravenpy=0.5.2=pyh7f9bfb9_0
>   - ravenpy=0.6.0=pyh1bb2064_2

<   - xclim=0.27.0=pyhd8ed1ab_0
>   - xclim=0.28.0=pyhd8ed1ab_0

# birdy rebuild
<   - birdy=v0.8.0=pyh6c4a22f_0
>   - birdy=v0.8.0=pyh6c4a22f_1

<   - cf_xarray=0.5.2=pyh6c4a22f_0
>   - cf_xarray=0.6.0=pyh6c4a22f_0

<   - cftime=1.4.1=py37h902c9e0_0
>   - cftime=1.5.0=py37h6f94858_0

<   - dask=2021.6.0=pyhd8ed1ab_0
>   - dask=2021.7.0=pyhd8ed1ab_0

<   - nc-time-axis=1.2.0=py_1
>   - nc-time-axis=1.3.1=pyhd8ed1ab_2

<   - rioxarray=0.4.1.post0=pyhd8ed1ab_0
>   - rioxarray=0.5.0=pyhd8ed1ab_0

<   - numpy=1.20.3=py37h038b26d_1
>   - numpy=1.21.1=py37h038b26d_0

<   - pandas=1.2.4=py37h219a48f_0
>   - pandas=1.2.5=py37h219a48f_0

<   - plotly=4.14.3=pyh44b312d_0
>   - plotly=5.1.0=pyhd8ed1ab_1

<     - nbconvert==5.6.1
>   - nbconvert=6.1.0=py37h89c1867_0
```

## Changes

- unpin `cftime`, since SciTools/nc-time-axis/issues/58 resolved
- add `patch` to pull unreleased fixes if needed
- pin pandas due to xarray (pydata/xarray#5588 (comment))

## Additional Information

Jenkins build, only known intermittent error (ESGF login, stress-test.ipynb) http://jenkins.ouranos.ca/job/PAVICS-e2e-workflow-tests/job/new-docker-full-build/3/console

Jenkins build against Raven notebooks: http://jenkins.ouranos.ca/job/PAVICS-e2e-workflow-tests/job/new-docker-full-build/6/console

Matching PR to deploy this Jupyter env on PAVICS bird-house/birdhouse-deploy#183

Full `conda env export` diff:
[210527.1-update20210618-210723-conda-env-export.diff.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/6870972/210527.1-update20210618-210723-conda-env-export.diff.txt)
```diff
10c10
<   - aiohttp=3.7.4=py37h5e8e339_0
---
>   - aiohttp=3.7.4.post0=py37h5e8e339_0
14c14
<   - anyio=3.1.0=py37h89c1867_0
---
>   - anyio=3.3.0=py37h89c1867_0
25,26c25,26
<   - birdy=v0.8.0=pyh6c4a22f_0
<   - bleach=3.3.0=pyh44b312d_0
---
>   - birdy=v0.8.0=pyh6c4a22f_1
>   - bleach=3.3.1=pyhd8ed1ab_0
29c29
<   - bokeh=2.3.2=py37h89c1867_0
---
>   - bokeh=2.3.3=py37h89c1867_0
34,35c34,36
<   - brotli=1.0.9=h9c3ff4c_4
<   - brotli-python=1.0.9=py37hcd2ae1e_4
---
>   - brotli=1.0.9=h7f98852_5
>   - brotli-bin=1.0.9=h7f98852_5
>   - brotli-python=1.0.9=py37hcd2ae1e_5
51,52c52,53
<   - cf_xarray=0.5.2=pyh6c4a22f_0
<   - cffi=1.14.5=py37hc58025e_0
---
>   - cf_xarray=0.6.0=pyh6c4a22f_0
>   - cffi=1.14.6=py37hc58025e_0
55c56
<   - cftime=1.4.1=py37h902c9e0_0
---
>   - cftime=1.5.0=py37h6f94858_0
57a59
>   - charset-normalizer=2.0.0=pyhd8ed1ab_0
61c63
<   - climpred=2.1.2=pyhd8ed1ab_0
---
>   - climpred=2.1.4=pyhd8ed1ab_0
66c68
<   - configurable-http-proxy=4.4.0=node15_he6ea98c_0
---
>   - configurable-http-proxy=4.5.0=node15_he6ea98c_0
77,78c79,80
<   - dask=2021.6.0=pyhd8ed1ab_0
<   - dask-core=2021.6.0=pyhd8ed1ab_0
---
>   - dask=2021.7.0=pyhd8ed1ab_0
>   - dask-core=2021.7.0=pyhd8ed1ab_0
83,84c85,86
<   - debugpy=1.3.0=py37hcd2ae1e_0
<   - decorator=4.4.2=py_0
---
>   - debugpy=1.4.0=py37hcd2ae1e_0
>   - decorator=5.0.9=pyhd8ed1ab_0
87,88c89,90
<   - distarray=2.12.2=py_1
<   - distributed=2021.6.0=py37h89c1867_0
---
>   - distarray=2.12.2=pyhd8ed1ab_2
>   - distributed=2021.7.0=py37h89c1867_0
98d99
<   - esmtools=1.1.3=py_0
105c106
<   - flask-compress=1.10.0=pyhd8ed1ab_0
---
>   - flask-compress=1.10.1=pyhd8ed1ab_0
109c110
<   - fsspec=2021.6.0=pyhd8ed1ab_0
---
>   - fsspec=2021.7.0=pyhd8ed1ab_0
112,113c113,114
<   - g2clib=1.6.0=hf3f1b0b_9
<   - gcsfs=2021.6.0=pyhd8ed1ab_0
---
>   - g2clib=1.6.3=hdfa6d74_0
>   - gcsfs=2021.7.0=pyhd8ed1ab_0
116c117,118
<   - geopandas=0.9.0=pyhd8ed1ab_0
---
>   - geopandas=0.9.0=pyhd8ed1ab_1
>   - geopandas-base=0.9.0=pyhd8ed1ab_1
125c127
<   - gitpython=3.1.17=pyhd8ed1ab_0
---
>   - gitpython=3.1.19=pyhd8ed1ab_0
130c132
<   - google-auth=1.30.0=pyh44b312d_0
---
>   - google-auth=1.33.1=pyh6c4a22f_0
136c138
<   - h5py=3.2.1=nompi_py37ha3df211_100
---
>   - h5py=3.3.0=nompi_py37ha3df211_100
140,141c142,143
<   - holoviews=1.14.4=pyhd8ed1ab_0
<   - hvplot=0.7.2=pyh6c4a22f_0
---
>   - holoviews=1.14.5=pyhd8ed1ab_0
>   - hvplot=0.7.3=pyh6c4a22f_0
143c145
<   - idna=2.10=pyh9f0ad1d_0
---
>   - idna=3.1=pyhd3deb0d_0
146,148c148,150
<   - importlib-metadata=4.5.0=py37h89c1867_0
<   - importlib_metadata=4.5.0=hd8ed1ab_0
<   - importlib_resources=5.1.4=pyhd8ed1ab_0
---
>   - importlib-metadata=4.6.1=py37h89c1867_0
>   - importlib_metadata=4.6.1=hd8ed1ab_0
>   - importlib_resources=5.2.0=pyhd8ed1ab_0
156,157c158,159
<   - ipyleaflet=0.13.6=pyhd8ed1ab_1
<   - ipython=7.24.1=py37h085eea5_0
---
>   - ipyleaflet=0.14.0=pyhd8ed1ab_1
>   - ipython=7.25.0=py37h085eea5_1
178c180
<   - jupyter_server=1.8.0=pyhd8ed1ab_0
---
>   - jupyter_server=1.10.1=pyhd8ed1ab_0
180,181c182,183
<   - jupyterhub=1.4.1=py37h89c1867_0
<   - jupyterhub-base=1.4.1=py37h89c1867_0
---
>   - jupyterhub=1.4.2=py37h89c1867_0
>   - jupyterhub-base=1.4.2=py37h89c1867_0
187c189
<   - jupytext=1.11.2=pyh6c4a22f_0
---
>   - jupytext=1.11.4=pyhd0ecf6b_0
195c197
<   - ld_impl_linux-64=2.35.1=hea4e1c9_2
---
>   - ld_impl_linux-64=2.36.1=hea4e1c9_1
197c199
<   - libaec=1.0.4=h9c3ff4c_1
---
>   - libaec=1.0.5=h9c3ff4c_0
198a201,203
>   - libbrotlicommon=1.0.9=h7f98852_5
>   - libbrotlidec=1.0.9=h7f98852_5
>   - libbrotlienc=1.0.9=h7f98852_5
212c217
<   - libgcc-ng=9.3.0=h2828fa1_19
---
>   - libgcc-ng=11.1.0=hc902ee8_0
214,215c219,220
<   - libgfortran-ng=9.3.0=hff62375_19
<   - libgfortran5=9.3.0=hff62375_19
---
>   - libgfortran-ng=11.1.0=h69a702a_0
>   - libgfortran5=11.1.0=h6c583b3_0
217c222
<   - libgomp=9.3.0=h2828fa1_19
---
>   - libgomp=11.1.0=hc902ee8_0
219,220c224,225
<   - libidn2=2.3.1=h7f98852_0
<   - libkml=1.3.0=h238a007_1013
---
>   - libidn2=2.3.2=h7f98852_0
>   - libkml=1.3.0=h238a007_1014
231c236
<   - libprotobuf=3.17.2=h780b84a_0
---
>   - libprotobuf=3.17.2=h780b84a_1
234c239
<   - libspatialindex=1.9.3=h9c3ff4c_3
---
>   - libspatialindex=1.9.3=h9c3ff4c_4
237c242
<   - libstdcxx-ng=9.3.0=h6de172a_19
---
>   - libstdcxx-ng=11.1.0=h56837e0_0
239c244
<   - libunistring=0.9.10=h14c3975_0
---
>   - libunistring=0.9.10=h7f98852_0
241c246
<   - libuv=1.41.0=h7f98852_0
---
>   - libuv=1.41.1=h7f98852_0
254a260
>   - mapclassify=2.4.2=pyhd8ed1ab_0
260a267
>   - mdit-py-plugins=0.2.8=pyhd8ed1ab_0
263c270
<   - mistune=0.8.4=py37h5e8e339_1003
---
>   - mistune=0.8.4=py37h5e8e339_1004
272a280
>   - nbconvert=6.1.0=py37h89c1867_0
276c284
<   - nc-time-axis=1.2.0=py_1
---
>   - nc-time-axis=1.3.1=pyhd8ed1ab_2
282c290
<   - networkx=2.5.1=pyhd8ed1ab_0
---
>   - networkx=2.5=py_0
288,289c296,297
<   - numcodecs=0.7.3=py37hcd2ae1e_0
<   - numpy=1.20.3=py37h038b26d_1
---
>   - numcodecs=0.8.0=py37hcd2ae1e_0
>   - numpy=1.21.1=py37h038b26d_0
298c306
<   - packaging=20.9=pyh44b312d_0
---
>   - packaging=21.0=pyhd8ed1ab_0
300,301c308,309
<   - pandas=1.2.4=py37h219a48f_0
<   - pandoc=2.14.0.2=h7f98852_0
---
>   - pandas=1.2.5=py37h219a48f_0
>   - pandoc=2.14.1=h7f98852_0
303,304c311,312
<   - panel=0.11.3=pyhd8ed1ab_0
<   - param=1.10.1=pyhd3deb0d_0
---
>   - panel=0.12.0=pyhd8ed1ab_0
>   - param=1.11.1=pyh6c4a22f_0
308c316
<   - pcre=8.44=he1b5a44_0
---
>   - pcre=8.45=h9c3ff4c_0
313c321
<   - pip=21.1.2=pyhd8ed1ab_0
---
>   - pip=21.1.3=pyhd8ed1ab_0
315c323
<   - plotly=4.14.3=pyh44b312d_0
---
>   - plotly=5.1.0=pyhd8ed1ab_1
323,324c331,332
<   - prompt-toolkit=3.0.18=pyha770c72_0
<   - prompt_toolkit=3.0.18=hd8ed1ab_0
---
>   - prompt-toolkit=3.0.19=pyha770c72_0
>   - prompt_toolkit=3.0.19=hd8ed1ab_0
340c348
<   - pygeos=0.10=py37h2d1e849_0
---
>   - pygeos=0.10.1=py37h2d1e849_0
345c353
<   - pyproj=3.0.1=py37h63c117d_0
---
>   - pyproj=3.1.0=py37h20b8899_3
356c364
<   - python-dateutil=2.8.1=py_0
---
>   - python-dateutil=2.8.2=pyhd8ed1ab_0
360c368
<   - python_abi=3.7=1_cp37m
---
>   - python_abi=3.7=2_cp37m
362c370,371
<   - pyviz_comms=2.0.2=pyhd8ed1ab_0
---
>   - pyu2f=0.1.5=pyhd8ed1ab_0
>   - pyviz_comms=2.1.0=pyhd8ed1ab_0
367c376
<   - qtconsole=5.1.0=pyhd8ed1ab_0
---
>   - qtconsole=5.1.1=pyhd8ed1ab_0
371c380
<   - ravenpy=0.5.2=pyh7f9bfb9_0
---
>   - ravenpy=0.6.0=pyh1bb2064_2
374c383
<   - requests=2.25.1=pyhd3deb0d_0
---
>   - requests=2.26.0=pyhd8ed1ab_0
375a385
>   - requests-unixsocket=0.2.0=py_0
377c387
<   - rioxarray=0.4.1.post0=pyhd8ed1ab_0
---
>   - rioxarray=0.5.0=pyhd8ed1ab_0
380,381c390,391
<   - rtree=0.9.7=py37h0b55af0_1
<   - ruamel.yaml=0.17.9=py37h5e8e339_0
---
>   - rtree=0.9.7=py37h0b55af0_2
>   - ruamel.yaml=0.17.10=py37h5e8e339_0
383c393
<   - scikit-image=0.18.1=py37hdc94413_0
---
>   - scikit-image=0.18.2=py37h219a48f_0
385,386c395,396
<   - scipy=1.6.3=py37h29e03ee_0
<   - send2trash=1.5.0=py_0
---
>   - scipy=1.7.0=py37h29e03ee_1
>   - send2trash=1.7.1=pyhd8ed1ab_0
397,398c407,408
<   - sqlalchemy=1.4.18=py37h5e8e339_0
<   - sqlite=3.35.5=h74cdb3f_0
---
>   - sqlalchemy=1.4.22=py37h5e8e339_0
>   - sqlite=3.36.0=h9cd32fc_0
400a411
>   - tenacity=8.0.1=pyhd8ed1ab_0
403c414
<   - threadpoolctl=2.1.0=pyh5ca1d4c_0
---
>   - threadpoolctl=2.2.0=pyh8a188c0_0
411c422
<   - tqdm=4.61.1=pyhd8ed1ab_0
---
>   - tqdm=4.61.2=pyhd8ed1ab_1
416,417c427,428
<   - tzcode=2021a=h7f98852_1
<   - tzdata=2021a=he74cb21_0
---
>   - tzcode=2021a=h7f98852_2
>   - tzdata=2021a=he74cb21_1
419c430
<   - urllib3=1.26.5=pyhd8ed1ab_0
---
>   - urllib3=1.26.6=pyhd8ed1ab_0
428c439
<   - wget=1.20.1=h22169c7_0
---
>   - wget=1.20.3=ha56f1ee_0
434c445
<   - xclim=0.27.0=pyhd8ed1ab_0
---
>   - xclim=0.28.0=pyhd8ed1ab_0
436,439c447,450
<   - xesmf=0.5.3=pyhd8ed1ab_0
<   - xeus=1.0.3=h7d0c39e_1
<   - xeus-python=0.12.4=py37h52ea871_0
<   - xhistogram=0.2.0=pyhd8ed1ab_0
---
>   - xesmf=0.6.0=pyhd8ed1ab_0
>   - xeus=1.0.4=h7d0c39e_0
>   - xeus-python=0.12.5=py37h4b46df4_2
>   - xhistogram=0.3.0=pyhd8ed1ab_0
452c463
<   - xskillscore=0.0.18=py_1
---
>   - xskillscore=0.0.22=pyhd8ed1ab_0
455c466
<   - yarl=1.6.3=py37h5e8e339_1
---
>   - yarl=1.6.3=py37h5e8e339_2
460c471
<   - zipp=3.4.1=pyhd8ed1ab_0
---
>   - zipp=3.5.0=pyhd8ed1ab_0
468,469c479,480
<     - handcalcs==1.3.0
<     - innerscope==0.2.0
---
>     - handcalcs==1.4.1
>     - innerscope==0.5.0
472d482
<     - nbconvert==5.6.1
```

Full new `conda env export`:
[210723-conda-env-export.yml.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/6870973/210723-conda-env-export.yml.txt)
```
name: birdy
channels:
  - cdat
  - conda-forge
  - defaults
dependencies:
  - _libgcc_mutex=0.1=conda_forge
  - _openmp_mutex=4.5=1_gnu
  - affine=2.3.0=py_0
  - aiohttp=3.7.4.post0=py37h5e8e339_0
  - alembic=1.6.5=pyhd8ed1ab_0
  - alsa-lib=1.2.3=h516909a_0
  - ansi2html=1.6.0=py37h89c1867_1
  - anyio=3.3.0=py37h89c1867_0
  - appdirs=1.4.4=pyh9f0ad1d_0
  - argon2-cffi=20.1.0=py37h5e8e339_2
  - asciitree=0.3.3=py_2
  - async-timeout=3.0.1=py_1000
  - async_generator=1.10=py_0
  - attrs=21.2.0=pyhd8ed1ab_0
  - backcall=0.2.0=pyh9f0ad1d_0
  - backports=1.0=py_2
  - backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
  - beautifulsoup4=4.9.3=pyhb0f4dca_0
  - birdy=v0.8.0=pyh6c4a22f_1
  - bleach=3.3.1=pyhd8ed1ab_0
  - blinker=1.4=py_1
  - blosc=1.21.0=h9c3ff4c_0
  - bokeh=2.3.3=py37h89c1867_0
  - boltons=21.0.0=pyhd8ed1ab_0
  - boost-cpp=1.74.0=hc6e9bd1_3
  - bottleneck=1.3.2=py37h902c9e0_3
  - branca=0.4.2=pyhd8ed1ab_0
  - brotli=1.0.9=h7f98852_5
  - brotli-bin=1.0.9=h7f98852_5
  - brotli-python=1.0.9=py37hcd2ae1e_5
  - brotlipy=0.7.0=py37h5e8e339_1001
  - brunsli=0.1=h9c3ff4c_0
  - bzip2=1.0.8=h7f98852_4
  - c-ares=1.17.1=h7f98852_1
  - ca-certificates=2021.5.30=ha878542_0
  - cached-property=1.5.2=hd8ed1ab_1
  - cached_property=1.5.2=pyha770c72_1
  - cachetools=4.2.2=pyhd8ed1ab_0
  - cairo=1.16.0=h6cf1ce9_1008
  - cartopy=0.19.0.post1=py37h0c48da3_0
  - cdat_info=8.2.1=pyh9f0ad1d_1
  - cdtime=3.1.4=py37h5ad02f4_2
  - cdutil=8.2.1=pyh9f0ad1d_0
  - certifi=2021.5.30=py37h89c1867_0
  - certipy=0.1.3=py_0
  - cf_xarray=0.6.0=pyh6c4a22f_0
  - cffi=1.14.6=py37hc58025e_0
  - cfgrib=0.9.9.0=pyhd8ed1ab_1
  - cfitsio=3.470=hb418390_7
  - cftime=1.5.0=py37h6f94858_0
  - chardet=4.0.0=py37h89c1867_1
  - charls=2.2.0=h9c3ff4c_0
  - charset-normalizer=2.0.0=pyhd8ed1ab_0
  - click=7.1.2=pyh9f0ad1d_0
  - click-plugins=1.1.1=py_0
  - cligj=0.7.2=pyhd8ed1ab_0
  - climpred=2.1.4=pyhd8ed1ab_0
  - clisops=0.6.5=pyh6c4a22f_0
  - cloudpickle=1.6.0=py_0
  - colorama=0.4.4=pyh9f0ad1d_0
  - colorcet=2.0.6=pyhd8ed1ab_0
  - configurable-http-proxy=4.5.0=node15_he6ea98c_0
  - coverage=5.5=py37h5e8e339_0
  - cryptography=3.4.7=py37h5d9358c_0
  - curl=7.77.0=hea6ffbf_0
  - cycler=0.10.0=py_2
  - cytoolz=0.11.0=py37h5e8e339_3
  - dash=1.20.0=pyhd8ed1ab_0
  - dash-core-components=1.16.0=pyhd8ed1ab_0
  - dash-html-components=1.1.3=pyhd8ed1ab_0
  - dash-renderer=1.9.1=pyhd8ed1ab_0
  - dash-table=4.11.3=pyhd8ed1ab_0
  - dask=2021.7.0=pyhd8ed1ab_0
  - dask-core=2021.7.0=pyhd8ed1ab_0
  - dataclasses=0.8=pyhc8e2a94_1
  - datashader=0.13.0=pyh6c4a22f_0
  - datashape=0.5.4=py_1
  - dbus=1.13.6=h48d8840_2
  - debugpy=1.4.0=py37hcd2ae1e_0
  - decorator=5.0.9=pyhd8ed1ab_0
  - defusedxml=0.7.1=pyhd8ed1ab_0
  - descartes=1.1.0=py_4
  - distarray=2.12.2=pyhd8ed1ab_2
  - distributed=2021.7.0=py37h89c1867_0
  - docopt=0.6.2=py_1
  - docrep=0.3.2=pyh44b312d_0
  - dv3d=8.2.1=pyh9f0ad1d_0
  - eccodes=2.21.0=ha0e6eb6_0
  - entrypoints=0.3=pyhd8ed1ab_1003
  - eofs=1.4.0=py_0
  - esgf-compute-api=2.3.9=0_h1234567_
  - esmf=8.1.0=nompi_hed08645_0
  - esmpy=8.1.0=nompi_py37hff16fce_0
  - expat=2.4.1=h9c3ff4c_0
  - fasteners=0.16=pyhd8ed1ab_0
  - fastprogress=1.0.0=py_0
  - ffmpeg=4.2.3=h167e202_0
  - fiona=1.8.18=py37h527b4ca_0
  - flask=2.0.1=pyhd8ed1ab_0
  - flask-compress=1.10.1=pyhd8ed1ab_0
  - fontconfig=2.13.1=hba837de_1005
  - freetype=2.10.4=h0708190_1
  - freexl=1.0.6=h7f98852_0
  - fsspec=2021.7.0=pyhd8ed1ab_0
  - funcsigs=1.0.2=py_3
  - future=0.18.2=py37h89c1867_3
  - g2clib=1.6.3=hdfa6d74_0
  - gcsfs=2021.7.0=pyhd8ed1ab_0
  - gdal=3.1.4=py37h2ec2946_8
  - genutil=8.2.1=py37h161383b_1
  - geopandas=0.9.0=pyhd8ed1ab_1
  - geopandas-base=0.9.0=pyhd8ed1ab_1
  - geos=3.9.1=h9c3ff4c_2
  - geotiff=1.6.0=h2b14fbe_4
  - geoviews=1.9.1=pyhd8ed1ab_0
  - geoviews-core=1.9.1=pyha770c72_0
  - gettext=0.19.8.1=h0b5b191_1005
  - ghostscript=9.54.0=h9c3ff4c_1
  - giflib=5.2.1=h36c2ea0_2
  - gitdb=4.0.7=pyhd8ed1ab_0
  - gitpython=3.1.19=pyhd8ed1ab_0
  - glib=2.68.3=h9c3ff4c_0
  - glib-tools=2.68.3=h9c3ff4c_0
  - gmp=6.2.1=h58526e2_0
  - gnutls=3.6.13=h85f3911_1
  - google-auth=1.33.1=pyh6c4a22f_0
  - google-auth-oauthlib=0.4.4=pyhd8ed1ab_0
  - greenlet=1.1.0=py37hcd2ae1e_0
  - gst-plugins-base=1.18.4=hf529b03_2
  - gstreamer=1.18.4=h76c114f_2
  - h5netcdf=0.11.0=pyhd8ed1ab_0
  - h5py=3.3.0=nompi_py37ha3df211_100
  - hdf4=4.2.15=h10796ff_3
  - hdf5=1.10.6=nompi_h6a2412b_1114
  - heapdict=1.0.1=py_0
  - holoviews=1.14.5=pyhd8ed1ab_0
  - hvplot=0.7.3=pyh6c4a22f_0
  - icu=68.1=h58526e2_0
  - idna=3.1=pyhd3deb0d_0
  - imagecodecs=2021.3.31=py37haf4b6ec_0
  - imageio=2.9.0=py_0
  - importlib-metadata=4.6.1=py37h89c1867_0
  - importlib_metadata=4.6.1=hd8ed1ab_0
  - importlib_resources=5.2.0=pyhd8ed1ab_0
  - iniconfig=1.1.1=pyh9f0ad1d_0
  - intake=0.6.2=pyhd8ed1ab_0
  - intake-esm=2021.1.15=pyhd8ed1ab_0
  - intake-geopandas=0.2.4=pyhd8ed1ab_0
  - intake-thredds=2021.6.16=pyhd8ed1ab_0
  - intake-xarray=0.5.0=pyhd8ed1ab_0
  - ipykernel=5.5.5=py37h085eea5_0
  - ipyleaflet=0.14.0=pyhd8ed1ab_1
  - ipython=7.25.0=py37h085eea5_1
  - ipython_genutils=0.2.0=py_1
  - ipywidgets=7.6.3=pyhd3deb0d_0
  - itsdangerous=2.0.1=pyhd8ed1ab_0
  - jasper=1.900.1=h07fcdf6_1006
  - jedi=0.18.0=py37h89c1867_2
  - jinja2=3.0.1=pyhd8ed1ab_0
  - joblib=1.0.1=pyhd8ed1ab_0
  - jpeg=9d=h36c2ea0_0
  - json-c=0.15=h98cffda_0
  - json5=0.9.5=pyh9f0ad1d_0
  - jsonpickle=2.0.0=pyhd8ed1ab_0
  - jsonschema=3.2.0=pyhd8ed1ab_3
  - jupyter=1.0.0=py37h89c1867_6
  - jupyter-archive=2.2.0=pyhd8ed1ab_0
  - jupyter-dash=0.4.0=pyhd8ed1ab_0
  - jupyter_bokeh=2.0.4=pyhd8ed1ab_0
  - jupyter_client=6.1.12=pyhd8ed1ab_0
  - jupyter_conda=5.1.1=hd8ed1ab_0
  - jupyter_console=6.4.0=pyhd8ed1ab_0
  - jupyter_core=4.7.1=py37h89c1867_0
  - jupyter_server=1.10.1=pyhd8ed1ab_0
  - jupyter_telemetry=0.1.0=pyhd8ed1ab_1
  - jupyterhub=1.4.2=py37h89c1867_0
  - jupyterhub-base=1.4.2=py37h89c1867_0
  - jupyterlab=2.2.9=pyhd8ed1ab_0
  - jupyterlab-git=0.24.0=pyhd8ed1ab_0
  - jupyterlab_pygments=0.1.2=pyh9f0ad1d_0
  - jupyterlab_server=1.2.0=py_0
  - jupyterlab_widgets=1.0.0=pyhd8ed1ab_1
  - jupytext=1.11.4=pyhd0ecf6b_0
  - jxrlib=1.1=h7f98852_2
  - kealib=1.4.14=hcc255d8_2
  - kiwisolver=1.3.1=py37h2527ec5_1
  - krb5=1.19.1=hcc1bbae_0
  - lame=3.100=h7f98852_1001
  - lazy-object-proxy=1.6.0=py37h5e8e339_0
  - lcms2=2.12=hddcbb42_0
  - ld_impl_linux-64=2.36.1=hea4e1c9_1
  - lerc=2.2.1=h9c3ff4c_0
  - libaec=1.0.5=h9c3ff4c_0
  - libblas=3.8.0=17_openblas
  - libbrotlicommon=1.0.9=h7f98852_5
  - libbrotlidec=1.0.9=h7f98852_5
  - libbrotlienc=1.0.9=h7f98852_5
  - libcblas=3.8.0=17_openblas
  - libcdms=3.1.2=h981a4fd_113
  - libcf=1.0.3=py37heda41dd_109
  - libclang=11.1.0=default_ha53f305_1
  - libcurl=7.77.0=h2574ce0_0
  - libdap4=3.20.6=hd7c4107_2
  - libdeflate=1.7=h7f98852_5
  - libdrs=3.1.2=h7918d09_113
  - libdrs_f=3.1.2=h5026c31_111
  - libedit=3.1.20191231=he28a2e2_2
  - libev=4.33=h516909a_1
  - libevent=2.1.10=hcdb4288_3
  - libffi=3.3=h58526e2_2
  - libgcc-ng=11.1.0=hc902ee8_0
  - libgdal=3.1.4=h38ff51b_8
  - libgfortran-ng=11.1.0=h69a702a_0
  - libgfortran5=11.1.0=h6c583b3_0
  - libglib=2.68.3=h3e27bee_0
  - libgomp=11.1.0=hc902ee8_0
  - libiconv=1.16=h516909a_0
  - libidn2=2.3.2=h7f98852_0
  - libkml=1.3.0=h238a007_1014
  - liblapack=3.8.0=17_openblas
  - libllvm10=10.0.1=he513fc3_3
  - libllvm11=11.1.0=hf817b99_2
  - libnetcdf=4.7.4=nompi_h56d31a8_107
  - libnghttp2=1.43.0=h812cca2_0
  - libogg=1.3.4=h7f98852_1
  - libopenblas=0.3.10=pthreads_h4812303_5
  - libopus=1.3.1=h7f98852_1
  - libpng=1.6.37=h21135ba_2
  - libpq=13.3=hd57d9b9_0
  - libprotobuf=3.17.2=h780b84a_1
  - librttopo=1.1.0=h1185371_6
  - libsodium=1.0.18=h36c2ea0_1
  - libspatialindex=1.9.3=h9c3ff4c_4
  - libspatialite=5.0.1=he52d314_3
  - libssh2=1.9.0=ha56f1ee_6
  - libstdcxx-ng=11.1.0=h56837e0_0
  - libtiff=4.2.0=hbd63e13_2
  - libunistring=0.9.10=h7f98852_0
  - libuuid=2.32.1=h7f98852_1000
  - libuv=1.41.1=h7f98852_0
  - libvorbis=1.3.7=h9c3ff4c_0
  - libwebp-base=1.2.0=h7f98852_2
  - libxcb=1.13=h7f98852_1003
  - libxkbcommon=1.0.3=he3ba5ed_0
  - libxml2=2.9.12=h72842e0_0
  - libxslt=1.1.33=h15afd5d_2
  - libzopfli=1.0.3=h9c3ff4c_0
  - llvmlite=0.36.0=py37h9d7f4d0_0
  - locket=0.2.0=py_2
  - lxml=4.6.3=py37h77fd288_0
  - lz4-c=1.9.3=h9c3ff4c_0
  - mako=1.1.4=pyh44b312d_0
  - mamba_gator=5.1.1=pyhd8ed1ab_0
  - mapclassify=2.4.2=pyhd8ed1ab_0
  - markdown=3.3.4=pyhd8ed1ab_0
  - markdown-it-py=1.1.0=pyhd8ed1ab_0
  - markupsafe=2.0.1=py37h5e8e339_0
  - matplotlib=3.4.2=py37h89c1867_0
  - matplotlib-base=3.4.2=py37hdd32ed1_0
  - matplotlib-inline=0.1.2=pyhd8ed1ab_2
  - mdit-py-plugins=0.2.8=pyhd8ed1ab_0
  - memory_profiler=0.58.0=py_0
  - mesalib=18.3.1=h590aaf7_0
  - mistune=0.8.4=py37h5e8e339_1004
  - monotonic=1.5=py_0
  - more-itertools=8.8.0=pyhd8ed1ab_0
  - msgpack-python=1.0.2=py37h2527ec5_1
  - multidict=5.1.0=py37h5e8e339_1
  - multipledispatch=0.6.0=py_0
  - munch=2.5.0=py_0
  - mysql-common=8.0.25=ha770c72_0
  - mysql-libs=8.0.25=h935591d_0
  - nbclient=0.5.3=pyhd8ed1ab_0
  - nbconvert=6.1.0=py37h89c1867_0
  - nbdime=2.1.0=py_0
  - nbformat=5.1.3=pyhd8ed1ab_0
  - nbval=0.9.6=pyh9f0ad1d_0
  - nc-time-axis=1.3.1=pyhd8ed1ab_2
  - ncurses=6.2=h58526e2_4
  - nest-asyncio=1.5.1=pyhd8ed1ab_0
  - netcdf-fortran=4.5.3=nompi_h996563d_103
  - netcdf4=1.5.6=nompi_py37hf7b6e46_102
  - nettle=3.6=he412f7d_0
  - networkx=2.5=py_0
  - nodejs=15.14.0=h92b4a50_0
  - notebook=6.4.0=pyha770c72_0
  - nspr=4.30=h9c3ff4c_0
  - nss=3.67=hb5efdd6_0
  - numba=0.53.1=py37hb11d6e1_1
  - numcodecs=0.8.0=py37hcd2ae1e_0
  - numpy=1.21.1=py37h038b26d_0
  - oauthlib=3.1.1=pyhd8ed1ab_0
  - olefile=0.46=pyh9f0ad1d_1
  - openblas=0.3.10=pthreads_h04b7a96_5
  - openh264=2.1.1=h780b84a_0
  - openjpeg=2.4.0=hb52868f_1
  - openssl=1.1.1k=h7f98852_0
  - ostrich=21.03.16=h4bd325d_1
  - owslib=0.24.1=pyhd8ed1ab_0
  - packaging=21.0=pyhd8ed1ab_0
  - pamela=1.0.0=py_0
  - pandas=1.2.5=py37h219a48f_0
  - pandoc=2.14.1=h7f98852_0
  - pandocfilters=1.4.2=py_1
  - panel=0.12.0=pyhd8ed1ab_0
  - param=1.11.1=pyh6c4a22f_0
  - parso=0.8.2=pyhd8ed1ab_0
  - partd=1.2.0=pyhd8ed1ab_0
  - patsy=0.5.1=py_0
  - pcre=8.45=h9c3ff4c_0
  - pexpect=4.8.0=pyh9f0ad1d_2
  - pickleshare=0.7.5=py_1003
  - pillow=8.2.0=py37h4600e1f_1
  - pint=0.17=pyhd8ed1ab_0
  - pip=21.1.3=pyhd8ed1ab_0
  - pixman=0.40.0=h36c2ea0_0
  - plotly=5.1.0=pyhd8ed1ab_1
  - pluggy=0.13.1=py37h89c1867_4
  - pooch=1.4.0=pyhd8ed1ab_0
  - poppler=0.89.0=h2de54a5_5
  - poppler-data=0.4.10=0
  - postgresql=13.3=h2510834_0
  - proj=7.2.0=h277dcde_2
  - prometheus_client=0.11.0=pyhd8ed1ab_0
  - prompt-toolkit=3.0.19=pyha770c72_0
  - prompt_toolkit=3.0.19=hd8ed1ab_0
  - properscoring=0.1=py_0
  - protobuf=3.17.2=py37hcd2ae1e_0
  - pscript=0.7.5=pyhd3deb0d_0
  - psutil=5.8.0=py37h5e8e339_1
  - pthread-stubs=0.4=h36c2ea0_1001
  - ptyprocess=0.7.0=pyhd3deb0d_0
  - py=1.10.0=pyhd3deb0d_0
  - pyasn1=0.4.8=py_0
  - pyasn1-modules=0.2.7=py_0
  - pycparser=2.20=pyh9f0ad1d_2
  - pyct=0.4.6=py_0
  - pyct-core=0.4.6=py_0
  - pycurl=7.43.0.6=py37h88a64d2_1
  - pydantic=1.8.2=py37h5e8e339_0
  - pydap=3.2.2=pyh9f0ad1d_1001
  - pygeos=0.10.1=py37h2d1e849_0
  - pygments=2.9.0=pyhd8ed1ab_0
  - pyjwt=2.1.0=pyhd8ed1ab_0
  - pyopenssl=20.0.1=pyhd8ed1ab_0
  - pyparsing=2.4.7=pyh9f0ad1d_0
  - pyproj=3.1.0=py37h20b8899_3
  - pyqt=5.12.3=py37h89c1867_7
  - pyqt-impl=5.12.3=py37he336c9b_7
  - pyqt5-sip=4.19.18=py37hcd2ae1e_7
  - pyqtchart=5.12=py37he336c9b_7
  - pyqtwebengine=5.12.1=py37he336c9b_7
  - pyrsistent=0.17.3=py37h5e8e339_2
  - pyshp=2.1.3=pyh44b312d_0
  - pysocks=1.7.1=py37h89c1867_3
  - pytest=6.2.4=py37h89c1867_0
  - python=3.7.10=hffdb5ce_100_cpython
  - python-dateutil=2.8.2=pyhd8ed1ab_0
  - python-eccodes=2021.03.0=py37h6f94858_1
  - python-editor=1.0.4=py_0
  - python-json-logger=2.0.1=pyh9f0ad1d_0
  - python_abi=3.7=2_cp37m
  - pytz=2021.1=pyhd8ed1ab_0
  - pyu2f=0.1.5=pyhd8ed1ab_0
  - pyviz_comms=2.1.0=pyhd8ed1ab_0
  - pywavelets=1.1.1=py37h902c9e0_3
  - pyyaml=5.4.1=py37h5e8e339_0
  - pyzmq=22.1.0=py37h336d617_0
  - qt=5.12.9=hda022c4_4
  - qtconsole=5.1.1=pyhd8ed1ab_0
  - qtpy=1.9.0=py_0
  - rasterio=1.2.1=py37ha549118_0
  - raven-hydro=3.0.4.322=h516393e_0
  - ravenpy=0.6.0=pyh1bb2064_2
  - readline=8.1=h46c0cb4_0
  - regionmask=0.6.2=pyhd8ed1ab_0
  - requests=2.26.0=pyhd8ed1ab_0
  - requests-oauthlib=1.3.0=pyh9f0ad1d_0
  - requests-unixsocket=0.2.0=py_0
  - retrying=1.3.3=py_2
  - rioxarray=0.5.0=pyhd8ed1ab_0
  - roocs-utils=0.4.2=pyh6c4a22f_0
  - rsa=4.7.2=pyh44b312d_0
  - rtree=0.9.7=py37h0b55af0_2
  - ruamel.yaml=0.17.10=py37h5e8e339_0
  - ruamel.yaml.clib=0.2.2=py37h5e8e339_2
  - scikit-image=0.18.2=py37h219a48f_0
  - scikit-learn=0.24.2=py37h18a542f_0
  - scipy=1.7.0=py37h29e03ee_1
  - send2trash=1.7.1=pyhd8ed1ab_0
  - setuptools=49.6.0=py37h89c1867_3
  - shapely=1.7.1=py37h2d1e849_5
  - siphon=0.9=py37h89c1867_0
  - six=1.16.0=pyh6c4a22f_0
  - smmap=3.0.5=pyh44b312d_0
  - snappy=1.1.8=he1b5a44_3
  - sniffio=1.2.0=py37h89c1867_1
  - snuggs=1.4.7=py_0
  - sortedcontainers=2.4.0=pyhd8ed1ab_0
  - soupsieve=2.0.1=py_1
  - sqlalchemy=1.4.22=py37h5e8e339_0
  - sqlite=3.36.0=h9cd32fc_0
  - statsmodels=0.12.2=py37h902c9e0_0
  - tblib=1.7.0=pyhd8ed1ab_0
  - tenacity=8.0.1=pyhd8ed1ab_0
  - terminado=0.10.1=py37h89c1867_0
  - testpath=0.5.0=pyhd8ed1ab_0
  - threadpoolctl=2.2.0=pyh8a188c0_0
  - threddsclient=0.4.2=py_0
  - tifffile=2021.4.8=pyhd8ed1ab_0
  - tiledb=2.2.9=h91fcb0e_0
  - tk=8.6.10=h21135ba_1
  - toml=0.10.2=pyhd8ed1ab_0
  - toolz=0.11.1=py_0
  - tornado=6.1=py37h5e8e339_1
  - tqdm=4.61.2=pyhd8ed1ab_1
  - traitlets=5.0.5=py_0
  - traittypes=0.2.1=pyh9f0ad1d_2
  - typing-extensions=3.10.0.0=hd8ed1ab_0
  - typing_extensions=3.10.0.0=pyha770c72_0
  - tzcode=2021a=h7f98852_2
  - tzdata=2021a=he74cb21_1
  - udunits2=2.2.27.27=h975c496_1
  - urllib3=1.26.6=pyhd8ed1ab_0
  - vcs=8.2.1=pyh9f0ad1d_0
  - voila=0.2.10=pyhd8ed1ab_0
  - vtk-cdat=8.2.0.8.2=py37_mesalibhead77ed_0
  - wcwidth=0.2.5=pyh9f0ad1d_2
  - webencodings=0.5.1=py_1
  - webob=1.8.7=pyhd8ed1ab_0
  - websocket-client=0.57.0=py37h89c1867_4
  - werkzeug=2.0.1=pyhd8ed1ab_0
  - wget=1.20.3=ha56f1ee_0
  - wheel=0.36.2=pyhd3deb0d_0
  - widgetsnbextension=3.5.1=py37h89c1867_4
  - wrapt=1.12.1=py37h5e8e339_3
  - x264=1!152.20180806=h14c3975_0
  - xarray=0.18.2=pyhd8ed1ab_0
  - xclim=0.28.0=pyhd8ed1ab_0
  - xerces-c=3.2.3=h9d8b166_2
  - xesmf=0.6.0=pyhd8ed1ab_0
  - xeus=1.0.4=h7d0c39e_0
  - xeus-python=0.12.5=py37h4b46df4_2
  - xhistogram=0.3.0=pyhd8ed1ab_0
  - xorg-kbproto=1.0.7=h7f98852_1002
  - xorg-libice=1.0.10=h7f98852_0
  - xorg-libsm=1.2.3=hd9c2040_1000
  - xorg-libx11=1.7.2=h7f98852_0
  - xorg-libxau=1.0.9=h7f98852_0
  - xorg-libxdmcp=1.1.3=h7f98852_0
  - xorg-libxext=1.3.4=h7f98852_1
  - xorg-libxrender=0.9.10=h7f98852_1003
  - xorg-renderproto=0.11.1=h7f98852_1002
  - xorg-xextproto=7.3.0=h7f98852_1002
  - xorg-xproto=7.0.31=h7f98852_1007
  - xrft=0.3.0=pyhd8ed1ab_0
  - xskillscore=0.0.22=pyhd8ed1ab_0
  - xz=5.2.5=h516909a_1
  - yaml=0.2.5=h516909a_0
  - yarl=1.6.3=py37h5e8e339_2
  - zarr=2.8.3=pyhd8ed1ab_0
  - zeromq=4.3.4=h9c3ff4c_0
  - zfp=0.5.5=h9c3ff4c_5
  - zict=2.0.0=py_0
  - zipp=3.5.0=pyhd8ed1ab_0
  - zlib=1.2.11=h516909a_1010
  - zstd=1.4.9=ha95c52a_0
  - pip:
    - astunparse==1.6.3
    - cdms2==3.1.5
    - colour==0.1.5
    - geojson==2.5.0
    - handcalcs==1.4.1
    - innerscope==0.5.0
    - ipython-blocking==0.2.1
    - jupyternotify==0.1.15
    - nbresuse==0.4.0
    - pixiedust==1.1.19
    - pymetalink==6.2
    - pytest-tornasync==0.6.0.post2
    - regrid2==3.1.5
    - requests-magpie==0.1.1
prefix: /opt/conda/envs/birdy
```
  • Loading branch information
tlvu authored Jul 26, 2021
2 parents ccac0b4 + 0250863 commit 3172f62
Show file tree
Hide file tree
Showing 6 changed files with 9 additions and 8 deletions.
2 changes: 1 addition & 1 deletion Jenkinsfile
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ pipeline {
// https://jenkins.io/doc/book/pipeline/syntax/
agent {
docker {
image "pavics/workflow-tests:210527.1-update20210705"
image "pavics/workflow-tests:210723"
label 'linux && docker'
}
}
Expand Down
2 changes: 1 addition & 1 deletion binder/Dockerfile
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
FROM pavics/workflow-tests:210527.1-update20210705
FROM pavics/workflow-tests:210723

USER root

Expand Down
2 changes: 1 addition & 1 deletion docker/Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@ RUN conda update conda

# to checkout other notebooks and to run pip install
RUN apt-get update && \
DEBIAN_FRONTEND=noninteractive apt-get install -y git mercurial gcc unzip fonts-humor-sans && \
DEBIAN_FRONTEND=noninteractive apt-get install -y git mercurial gcc unzip patch fonts-humor-sans && \
apt-get clean

COPY environment.yml /environment.yml
Expand Down
7 changes: 4 additions & 3 deletions docker/environment.yml
Original file line number Diff line number Diff line change
Expand Up @@ -23,7 +23,9 @@ dependencies:
- rasterio
- gdal # for osgeo
- geopandas
- pandas
# Pin pandas due to xarray
# https://github.com/pydata/xarray/issues/5588#issuecomment-885271773
- pandas==1.2.5
- rioxarray
- scikit-image
- ipyleaflet
Expand All @@ -44,8 +46,7 @@ dependencies:
# pinning hvplot did not solve the problem with violin plot.
- hvplot
- nc-time-axis
# Pin cftime because of https://github.com/SciTools/nc-time-axis/issues/58
- cftime==1.4.1
- cftime
- statsmodels # for ravenpy
# for error 'ImportError: HTTPFileSystem requires "requests" and "aiohttp" to
# be installed' with call 'fsspec.filesystem('https')'
Expand Down
2 changes: 1 addition & 1 deletion launchcontainer
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
#!/bin/sh -x

if [ -z "$DOCKER_IMAGE" ]; then
DOCKER_IMAGE="pavics/workflow-tests:210527.1-update20210705"
DOCKER_IMAGE="pavics/workflow-tests:210723"
fi

if [ -z "$CONTAINER_NAME" ]; then
Expand Down
2 changes: 1 addition & 1 deletion launchnotebook
Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@ if [ -z "$PORT" ]; then
fi

if [ -z "$DOCKER_IMAGE" ]; then
DOCKER_IMAGE="pavics/workflow-tests:210527.1-update20210705"
DOCKER_IMAGE="pavics/workflow-tests:210723"
fi

if [ -z "$CONTAINER_NAME" ]; then
Expand Down

0 comments on commit 3172f62

Please sign in to comment.