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Updated analysis: HGG subtyping to include GENCODE v39 gene symbols #487

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jharenza opened this issue Jan 10, 2023 · 1 comment
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@jharenza
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What analysis module should be updated and why?

molecular subtyping HGG

What changes need to be made? Please provide enough detail for another participant to make the update.

What input data should be used? Which data were used in the version being updated?

Update following gene symbols:

The following genes are used currently: "H3F3A", "HIST1H3B", "HIST1H3C", "HIST2H3C" - update defining lesions code to change:

H3-3A <- H3F3A
H3C2 <- HIST1H3B
H3C3 <- HIST1H3C
H3C14 <- HIST2H3C

When do you expect the revised analysis will be completed?

During v12 data release staggered PR

Who will complete the updated analysis?

@ewafula or @jharenza

@jharenza
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jharenza commented May 1, 2023

Closed with d3b-center/OpenPedCan-analysis#321

@jharenza jharenza closed this as completed May 1, 2023
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