Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Documentation #88

Merged
merged 31 commits into from
Aug 19, 2024
Merged

Documentation #88

merged 31 commits into from
Aug 19, 2024

Conversation

lizihao-anu
Copy link
Contributor

No description provided.

Moohan and others added 28 commits July 24, 2023 19:34
Co-authored-by: Jennit07 <67372904+Jennit07@users.noreply.github.com>
* Update to dev version

* Make testthat run in parallel

* Update variables to pass tests

* Update indiv number of variables

* Change exists tests to read

* Set an environment var to make testthat use multiple CPUs

* Revert changes and deal with NA chi/anon_chi

* Update documentation

* Style package

* Update tests so that they pass

* Style package

* fix tests

* Render `README.md` after changes to the `.Rmd` version

* exclude from tests for now

---------

Co-authored-by: James McMahon <james.mcmahon@phs.scot>
Co-authored-by: Jennit07 <Jennit07@users.noreply.github.com>
Co-authored-by: github-merge-queue[bot] <github-merge-queue[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <67372904+Jennit07@users.noreply.github.com>
Bumps [actions/checkout](https://github.com/actions/checkout) from 3 to 4.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](actions/checkout@v3...v4)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <67372904+Jennit07@users.noreply.github.com>
Bumps [peter-evans/create-pull-request](https://github.com/peter-evans/create-pull-request) from 4 to 5.
- [Release notes](https://github.com/peter-evans/create-pull-request/releases)
- [Commits](peter-evans/create-pull-request@v4...v5)

---
updated-dependencies:
- dependency-name: peter-evans/create-pull-request
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <67372904+Jennit07@users.noreply.github.com>
Bumps [stefanzweifel/git-auto-commit-action](https://github.com/stefanzweifel/git-auto-commit-action) from 4 to 5.
- [Release notes](https://github.com/stefanzweifel/git-auto-commit-action/releases)
- [Changelog](https://github.com/stefanzweifel/git-auto-commit-action/blob/master/CHANGELOG.md)
- [Commits](stefanzweifel/git-auto-commit-action@v4...v5)

---
updated-dependencies:
- dependency-name: stefanzweifel/git-auto-commit-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <67372904+Jennit07@users.noreply.github.com>
Bumps [JamesIves/github-pages-deploy-action](https://github.com/jamesives/github-pages-deploy-action) from 4.4.3 to 4.5.0.
- [Release notes](https://github.com/jamesives/github-pages-deploy-action/releases)
- [Commits](JamesIves/github-pages-deploy-action@v4.4.3...v4.5.0)

---
updated-dependencies:
- dependency-name: JamesIves/github-pages-deploy-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 3 to 4.
- [Release notes](https://github.com/actions/upload-artifact/releases)
- [Commits](actions/upload-artifact@v3...v4)

---
updated-dependencies:
- dependency-name: actions/upload-artifact
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <67372904+Jennit07@users.noreply.github.com>
Bumps [peter-evans/create-pull-request](https://github.com/peter-evans/create-pull-request) from 5 to 6.
- [Release notes](https://github.com/peter-evans/create-pull-request/releases)
- [Commits](peter-evans/create-pull-request@v5...v6)

---
updated-dependencies:
- dependency-name: peter-evans/create-pull-request
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [actions/cache](https://github.com/actions/cache) from 3 to 4.
- [Release notes](https://github.com/actions/cache/releases)
- [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md)
- [Commits](actions/cache@v3...v4)

---
updated-dependencies:
- dependency-name: actions/cache
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <67372904+Jennit07@users.noreply.github.com>
Updated to include reading in LTC 'catch all' variables
Co-authored-by: marjom02 <megan.mcnicol2@nhs.scot>
* force keytime format to hms

* Update documentation

* visible binding for global variables like ‘keytime1’

* minor changes

* fix keytime in column names

* import hms

---------

Co-authored-by: lizihao-anu <lizihao-anu@users.noreply.github.com>
Bumps [JamesIves/github-pages-deploy-action](https://github.com/jamesives/github-pages-deploy-action) from 4.5.0 to 4.6.0.
- [Release notes](https://github.com/jamesives/github-pages-deploy-action/releases)
- [Commits](JamesIves/github-pages-deploy-action@v4.5.0...v4.6.0)

---
updated-dependencies:
- dependency-name: JamesIves/github-pages-deploy-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@lizihao-anu lizihao-anu requested a review from Jennit07 August 16, 2024 15:09
Jennit07
Jennit07 previously approved these changes Aug 19, 2024
Copy link
Contributor

@Jennit07 Jennit07 left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Looks good, I wonder if we should be merging this into production? The reason is due to the new vignettes. We want to make sure they are deployed and we can add the links to the readme document

@lizihao-anu lizihao-anu changed the base branch from development to production August 19, 2024 08:52
@lizihao-anu lizihao-anu dismissed Jennit07’s stale review August 19, 2024 08:52

The base branch was changed.

@lizihao-anu lizihao-anu changed the base branch from production to development August 19, 2024 09:10
@lizihao-anu lizihao-anu requested a review from Jennit07 August 19, 2024 09:46
@lizihao-anu lizihao-anu added this pull request to the merge queue Aug 19, 2024
Merged via the queue into development with commit 85ed82f Aug 19, 2024
7 checks passed
@lizihao-anu lizihao-anu deleted the documentation branch August 19, 2024 09:51
github-merge-queue bot added a commit that referenced this pull request Aug 19, 2024
* Update to dev version

* Make testthat run in parallel

* Fix build tests (#63)

* Update variables to pass tests

* Update indiv number of variables

* Change exists tests to read

* Set an environment var to make testthat use multiple CPUs

---------

Co-authored-by: James McMahon <james.mcmahon@phs.scot>

* Bug/tidyselect not working (#85)

* Allow using tidyselect helpers with `col_select`

* Add some tests for tidyselect helpers

* Update documentation

* recid and partnership filter
allow for recid and partnership filter when they are not specified to select in columns

* Style package

* update tests

---------

Co-authored-by: Moohan <Moohan@users.noreply.github.com>
Co-authored-by: Zihao Li <lizihao_anu@outlook.com>
Co-authored-by: lizihao-anu <lizihao-anu@users.noreply.github.com>

* Documentation (#88)

* Update maintainer to Megan (#69)

* Update README.Rmd (#64)

Co-authored-by: Jennit07 <67372904+Jennit07@users.noreply.github.com>

* Bug - speed up `get_chi()` (#68)

* Update to dev version

* Make testthat run in parallel

* Update variables to pass tests

* Update indiv number of variables

* Change exists tests to read

* Set an environment var to make testthat use multiple CPUs

* Revert changes and deal with NA chi/anon_chi

* Update documentation

* Style package

* Update tests so that they pass

* Style package

* fix tests

* Render `README.md` after changes to the `.Rmd` version

* exclude from tests for now

---------

Co-authored-by: James McMahon <james.mcmahon@phs.scot>
Co-authored-by: Jennit07 <Jennit07@users.noreply.github.com>

* Render `README.md` after changes to the `.Rmd` version (#70)

Co-authored-by: github-merge-queue[bot] <github-merge-queue[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <67372904+Jennit07@users.noreply.github.com>

* Bump actions/checkout from 3 to 4 (#66)

Bumps [actions/checkout](https://github.com/actions/checkout) from 3 to 4.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](actions/checkout@v3...v4)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <67372904+Jennit07@users.noreply.github.com>

* Bump peter-evans/create-pull-request from 4 to 5 (#65)

Bumps [peter-evans/create-pull-request](https://github.com/peter-evans/create-pull-request) from 4 to 5.
- [Release notes](https://github.com/peter-evans/create-pull-request/releases)
- [Commits](peter-evans/create-pull-request@v4...v5)

---
updated-dependencies:
- dependency-name: peter-evans/create-pull-request
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <67372904+Jennit07@users.noreply.github.com>

* Bump stefanzweifel/git-auto-commit-action from 4 to 5 (#67)

Bumps [stefanzweifel/git-auto-commit-action](https://github.com/stefanzweifel/git-auto-commit-action) from 4 to 5.
- [Release notes](https://github.com/stefanzweifel/git-auto-commit-action/releases)
- [Changelog](https://github.com/stefanzweifel/git-auto-commit-action/blob/master/CHANGELOG.md)
- [Commits](stefanzweifel/git-auto-commit-action@v4...v5)

---
updated-dependencies:
- dependency-name: stefanzweifel/git-auto-commit-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <67372904+Jennit07@users.noreply.github.com>

* Bump JamesIves/github-pages-deploy-action from 4.4.3 to 4.5.0 (#71)

Bumps [JamesIves/github-pages-deploy-action](https://github.com/jamesives/github-pages-deploy-action) from 4.4.3 to 4.5.0.
- [Release notes](https://github.com/jamesives/github-pages-deploy-action/releases)
- [Commits](JamesIves/github-pages-deploy-action@v4.4.3...v4.5.0)

---
updated-dependencies:
- dependency-name: JamesIves/github-pages-deploy-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump actions/upload-artifact from 3 to 4 (#72)

Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 3 to 4.
- [Release notes](https://github.com/actions/upload-artifact/releases)
- [Commits](actions/upload-artifact@v3...v4)

---
updated-dependencies:
- dependency-name: actions/upload-artifact
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <67372904+Jennit07@users.noreply.github.com>

* Bump peter-evans/create-pull-request from 5 to 6 (#74)

Bumps [peter-evans/create-pull-request](https://github.com/peter-evans/create-pull-request) from 5 to 6.
- [Release notes](https://github.com/peter-evans/create-pull-request/releases)
- [Commits](peter-evans/create-pull-request@v5...v6)

---
updated-dependencies:
- dependency-name: peter-evans/create-pull-request
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump actions/cache from 3 to 4 (#73)

Bumps [actions/cache](https://github.com/actions/cache) from 3 to 4.
- [Release notes](https://github.com/actions/cache/releases)
- [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md)
- [Commits](actions/cache@v3...v4)

---
updated-dependencies:
- dependency-name: actions/cache
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <67372904+Jennit07@users.noreply.github.com>

* Update README.md (#75)

Updated to include reading in LTC 'catch all' variables

* change in episode file cost variable vector (#76)

Co-authored-by: marjom02 <megan.mcnicol2@nhs.scot>

* force keytime format to hms (#77)

* force keytime format to hms

* Update documentation

* visible binding for global variables like ‘keytime1’

* minor changes

* fix keytime in column names

* import hms

---------

Co-authored-by: lizihao-anu <lizihao-anu@users.noreply.github.com>

* Bump JamesIves/github-pages-deploy-action from 4.5.0 to 4.6.0 (#79)

Bumps [JamesIves/github-pages-deploy-action](https://github.com/jamesives/github-pages-deploy-action) from 4.5.0 to 4.6.0.
- [Release notes](https://github.com/jamesives/github-pages-deploy-action/releases)
- [Commits](JamesIves/github-pages-deploy-action@v4.5.0...v4.6.0)

---
updated-dependencies:
- dependency-name: JamesIves/github-pages-deploy-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* add vignette for SLFhelper documentation

* Style package

* Hide messages

* remove conflict

* Style package

* Split up documentation into 3 vignettes

* add a comparison table to show the efficiency improvement

* Update - round memory size

* replace columns by col_select and add tidyselect

* Style package

* update ep_file_vars and indiv_file_vars

* add session memory recommendation

* Update R-CMD-check.yaml

* fix cmd build error

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: James McMahon <james.mcmahon@phs.scot>
Co-authored-by: Jennit07 <67372904+Jennit07@users.noreply.github.com>
Co-authored-by: Jennit07 <Jennit07@users.noreply.github.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: github-merge-queue[bot] <github-merge-queue[bot]@users.noreply.github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Megan McNicol <43570769+SwiftySalmon@users.noreply.github.com>
Co-authored-by: marjom02 <megan.mcnicol2@nhs.scot>
Co-authored-by: lizihao-anu <lizihao-anu@users.noreply.github.com>
Co-authored-by: Jennifer Thom <jennifer.thom@phs.scot>

* Update documentation (#90)

Co-authored-by: github-merge-queue[bot] <118344674+github-merge-queue[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <67372904+Jennit07@users.noreply.github.com>

* Bump JamesIves/github-pages-deploy-action from 4.6.0 to 4.6.3 (#82)

Bumps [JamesIves/github-pages-deploy-action](https://github.com/jamesives/github-pages-deploy-action) from 4.6.0 to 4.6.3.
- [Release notes](https://github.com/jamesives/github-pages-deploy-action/releases)
- [Commits](JamesIves/github-pages-deploy-action@v4.6.0...v4.6.3)

---
updated-dependencies:
- dependency-name: JamesIves/github-pages-deploy-action
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <67372904+Jennit07@users.noreply.github.com>

* Increment version number to 0.10.2 (#81)

* Increment version number to 0.10.2

* update description

* Update R-CMD-check.yaml

* Update yaml

---------

Co-authored-by: Zihao Li <zihao.li@phs.scot>

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: James McMahon <james.mcmahon@phs.scot>
Co-authored-by: Jennit07 <67372904+Jennit07@users.noreply.github.com>
Co-authored-by: Moohan <Moohan@users.noreply.github.com>
Co-authored-by: lizihao-anu <lizihao-anu@users.noreply.github.com>
Co-authored-by: Jennit07 <Jennit07@users.noreply.github.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: github-merge-queue[bot] <github-merge-queue[bot]@users.noreply.github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Megan McNicol <43570769+SwiftySalmon@users.noreply.github.com>
Co-authored-by: marjom02 <megan.mcnicol2@nhs.scot>
Co-authored-by: Jennifer Thom <jennifer.thom@phs.scot>
Co-authored-by: github-merge-queue[bot] <118344674+github-merge-queue[bot]@users.noreply.github.com>
github-merge-queue bot added a commit that referenced this pull request Sep 9, 2024
* Update to dev version

* Make testthat run in parallel

* Fix build tests (#63)

* Update variables to pass tests

* Update indiv number of variables

* Change exists tests to read

* Set an environment var to make testthat use multiple CPUs

---------

Co-authored-by: James McMahon <james.mcmahon@phs.scot>

* Bug/tidyselect not working (#85)

* Allow using tidyselect helpers with `col_select`

* Add some tests for tidyselect helpers

* Update documentation

* recid and partnership filter
allow for recid and partnership filter when they are not specified to select in columns

* Style package

* update tests

---------

Co-authored-by: Moohan <Moohan@users.noreply.github.com>
Co-authored-by: Zihao Li <lizihao_anu@outlook.com>
Co-authored-by: lizihao-anu <lizihao-anu@users.noreply.github.com>

* Documentation (#88)

* Update maintainer to Megan (#69)

* Update README.Rmd (#64)

Co-authored-by: Jennit07 <67372904+Jennit07@users.noreply.github.com>

* Bug - speed up `get_chi()` (#68)

* Update to dev version

* Make testthat run in parallel

* Update variables to pass tests

* Update indiv number of variables

* Change exists tests to read

* Set an environment var to make testthat use multiple CPUs

* Revert changes and deal with NA chi/anon_chi

* Update documentation

* Style package

* Update tests so that they pass

* Style package

* fix tests

* Render `README.md` after changes to the `.Rmd` version

* exclude from tests for now

---------

Co-authored-by: James McMahon <james.mcmahon@phs.scot>
Co-authored-by: Jennit07 <Jennit07@users.noreply.github.com>

* Render `README.md` after changes to the `.Rmd` version (#70)

Co-authored-by: github-merge-queue[bot] <github-merge-queue[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <67372904+Jennit07@users.noreply.github.com>

* Bump actions/checkout from 3 to 4 (#66)

Bumps [actions/checkout](https://github.com/actions/checkout) from 3 to 4.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](actions/checkout@v3...v4)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <67372904+Jennit07@users.noreply.github.com>

* Bump peter-evans/create-pull-request from 4 to 5 (#65)

Bumps [peter-evans/create-pull-request](https://github.com/peter-evans/create-pull-request) from 4 to 5.
- [Release notes](https://github.com/peter-evans/create-pull-request/releases)
- [Commits](peter-evans/create-pull-request@v4...v5)

---
updated-dependencies:
- dependency-name: peter-evans/create-pull-request
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <67372904+Jennit07@users.noreply.github.com>

* Bump stefanzweifel/git-auto-commit-action from 4 to 5 (#67)

Bumps [stefanzweifel/git-auto-commit-action](https://github.com/stefanzweifel/git-auto-commit-action) from 4 to 5.
- [Release notes](https://github.com/stefanzweifel/git-auto-commit-action/releases)
- [Changelog](https://github.com/stefanzweifel/git-auto-commit-action/blob/master/CHANGELOG.md)
- [Commits](stefanzweifel/git-auto-commit-action@v4...v5)

---
updated-dependencies:
- dependency-name: stefanzweifel/git-auto-commit-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <67372904+Jennit07@users.noreply.github.com>

* Bump JamesIves/github-pages-deploy-action from 4.4.3 to 4.5.0 (#71)

Bumps [JamesIves/github-pages-deploy-action](https://github.com/jamesives/github-pages-deploy-action) from 4.4.3 to 4.5.0.
- [Release notes](https://github.com/jamesives/github-pages-deploy-action/releases)
- [Commits](JamesIves/github-pages-deploy-action@v4.4.3...v4.5.0)

---
updated-dependencies:
- dependency-name: JamesIves/github-pages-deploy-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump actions/upload-artifact from 3 to 4 (#72)

Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 3 to 4.
- [Release notes](https://github.com/actions/upload-artifact/releases)
- [Commits](actions/upload-artifact@v3...v4)

---
updated-dependencies:
- dependency-name: actions/upload-artifact
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <67372904+Jennit07@users.noreply.github.com>

* Bump peter-evans/create-pull-request from 5 to 6 (#74)

Bumps [peter-evans/create-pull-request](https://github.com/peter-evans/create-pull-request) from 5 to 6.
- [Release notes](https://github.com/peter-evans/create-pull-request/releases)
- [Commits](peter-evans/create-pull-request@v5...v6)

---
updated-dependencies:
- dependency-name: peter-evans/create-pull-request
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump actions/cache from 3 to 4 (#73)

Bumps [actions/cache](https://github.com/actions/cache) from 3 to 4.
- [Release notes](https://github.com/actions/cache/releases)
- [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md)
- [Commits](actions/cache@v3...v4)

---
updated-dependencies:
- dependency-name: actions/cache
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <67372904+Jennit07@users.noreply.github.com>

* Update README.md (#75)

Updated to include reading in LTC 'catch all' variables

* change in episode file cost variable vector (#76)

Co-authored-by: marjom02 <megan.mcnicol2@nhs.scot>

* force keytime format to hms (#77)

* force keytime format to hms

* Update documentation

* visible binding for global variables like ‘keytime1’

* minor changes

* fix keytime in column names

* import hms

---------

Co-authored-by: lizihao-anu <lizihao-anu@users.noreply.github.com>

* Bump JamesIves/github-pages-deploy-action from 4.5.0 to 4.6.0 (#79)

Bumps [JamesIves/github-pages-deploy-action](https://github.com/jamesives/github-pages-deploy-action) from 4.5.0 to 4.6.0.
- [Release notes](https://github.com/jamesives/github-pages-deploy-action/releases)
- [Commits](JamesIves/github-pages-deploy-action@v4.5.0...v4.6.0)

---
updated-dependencies:
- dependency-name: JamesIves/github-pages-deploy-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* add vignette for SLFhelper documentation

* Style package

* Hide messages

* remove conflict

* Style package

* Split up documentation into 3 vignettes

* add a comparison table to show the efficiency improvement

* Update - round memory size

* replace columns by col_select and add tidyselect

* Style package

* update ep_file_vars and indiv_file_vars

* add session memory recommendation

* Update R-CMD-check.yaml

* fix cmd build error

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: James McMahon <james.mcmahon@phs.scot>
Co-authored-by: Jennit07 <67372904+Jennit07@users.noreply.github.com>
Co-authored-by: Jennit07 <Jennit07@users.noreply.github.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: github-merge-queue[bot] <github-merge-queue[bot]@users.noreply.github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Megan McNicol <43570769+SwiftySalmon@users.noreply.github.com>
Co-authored-by: marjom02 <megan.mcnicol2@nhs.scot>
Co-authored-by: lizihao-anu <lizihao-anu@users.noreply.github.com>
Co-authored-by: Jennifer Thom <jennifer.thom@phs.scot>

* Update documentation (#90)

Co-authored-by: github-merge-queue[bot] <118344674+github-merge-queue[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <67372904+Jennit07@users.noreply.github.com>

* Bump JamesIves/github-pages-deploy-action from 4.6.0 to 4.6.3 (#82)

Bumps [JamesIves/github-pages-deploy-action](https://github.com/jamesives/github-pages-deploy-action) from 4.6.0 to 4.6.3.
- [Release notes](https://github.com/jamesives/github-pages-deploy-action/releases)
- [Commits](JamesIves/github-pages-deploy-action@v4.6.0...v4.6.3)

---
updated-dependencies:
- dependency-name: JamesIves/github-pages-deploy-action
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jennit07 <67372904+Jennit07@users.noreply.github.com>

* Increment version number to 0.10.2 (#81)

* Increment version number to 0.10.2

* update description

* Update R-CMD-check.yaml

* Update yaml

---------

Co-authored-by: Zihao Li <zihao.li@phs.scot>

* Fix the tidyselect feature bug (#95)

* reconstruct read_slf to fix bug of selecting feature

* Update documentation

* remove TODO add a filter by recid as it has been done

* Style package

* update ep and individual file variables

---------

Co-authored-by: lizihao-anu <lizihao-anu@users.noreply.github.com>
Co-authored-by: Jennit07 <67372904+Jennit07@users.noreply.github.com>

* Increment version number to 0.10.4

* Update NEWS

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: James McMahon <james.mcmahon@phs.scot>
Co-authored-by: Moohan <Moohan@users.noreply.github.com>
Co-authored-by: Zihao Li <lizihao_anu@outlook.com>
Co-authored-by: lizihao-anu <lizihao-anu@users.noreply.github.com>
Co-authored-by: Zihao Li <zihao.li@phs.scot>
Co-authored-by: Jennit07 <Jennit07@users.noreply.github.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: github-merge-queue[bot] <github-merge-queue[bot]@users.noreply.github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Megan McNicol <43570769+SwiftySalmon@users.noreply.github.com>
Co-authored-by: marjom02 <megan.mcnicol2@nhs.scot>
Co-authored-by: github-merge-queue[bot] <118344674+github-merge-queue[bot]@users.noreply.github.com>
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

4 participants