Releases: QIICR/dcmqi
Releases · QIICR/dcmqi
Latest (updated on 2024-09-05 02:09 UTC)
latest CI: update upload-artifact version to match download-artifact
v1.3.4
Contributors
fedorov and jadh4v
Assets 5
v1.3.3
v1.3.2
v1.3.1
What's Changed
- Switch to framesorter class by @michaelonken in #484
- Use label id as segment numbers by @michaelonken in #485
- Fix order of pixel spacing converting ITK->DICOM by @michaelonken in #486
- Fix publishing of docker images by @fedorov #487
Full Changelog: v1.3.0...v1.3.1
Contributors
fedorov and michaelonken
Assets 5
v1.3.0
Major highlights of this release:
- upgrade to ITK v5
- switch to GitHub Actions from platform-specific CI solutions
- major performance improvements for DICOM SEG conversion
- added ability to save non-overlapping DICOM SEG segments into a single file
$ git shortlog v1.2.5..v1.3.0 --no-merges
Andrey Fedorov (78):
ENH: switch to use ITKv5
COMP: remove references to multi threader
CI: fixing CircleCI and Appveyor
CI: switch to VS 2015
CI: use cmake 3.10.2 for travis-ci
ENH: resolve conflicts
CI: update python to 3.11
use pip3
ci
CI: update VS version
CI: update ITK package
CI: fix typo
CI: add back prebuilt packages paths
CI: update ITK path
CI: force build of SEM
update to use ITK with XML IO
trying to add missing modules
use package with missing headers fixed
update zlib package
BUG: try to fix multithreading
BUG: remove long type
BUG: remove unicode type
BUG: remove xrange
upgrade circleci cmake
replace deprecated dockcross image
replace deprecated dockcross image
try to set python 3.8 in dockcross container
CI: remove travis-ci
use shield badge for circleci
ENH: write all segments to the same file
ENH: adding parameterization for merged segments
BUG: add segments to existing segmentation
STYLE: remove blanks per codefactor
ENH: fix tests
BUG: fix overwrite of segment metadata
fix metadata init with mergedSegments on
WIP: use ImportImageFilter + iterators to copy frame
CI with gh-actions
Update cmake.yml
Update cmake.yml
CI: add timeout
CI: add windows
CI: change win python to 3.8
CI: add 7z unpack
CI: add win configure/build/package
CI: separate win workflow
CI: win only
CI: fix name
CI: debug
CI: fixes
CI: refinement of the github actions workflows
CI: add win configure/build/package
CI: separate win workflow
CI: win only
CI: fix name
CI: debug
CI: fixes
CI: refinement of the github actions workflows
CI: linux docker
CI docker fix
CI switch to fedorov docker for testing
CI bump timeout
CI: increase macos job timeout
CI: change build step
CI: adding upload linux package
CI: remove invalid option
CI: try to fix permissions
CI: try using a dedicated token
BUG: init badges from the QIICR project
CI: fix destination for the linux package
CI: add package publish for win and mac
CI: install scikit-ci-addons
DOC: update acks
DOC: add reference
CI: try new token
CI: revert to the earlier token
DOC: update readme and trigger GA
CI: trying to fix macos package publishing
BUG: specify full folder name
BUG: fix typo
BUG: add missing newlines
cmake: set dcmqi version to 1.2.6
CI: enable testing on win and mac
CI: trying to fix release package upload
cmake: set dcmqi version to 1.3.0
Jean-Christophe Fillion-Robin (2):
BUG: Ensure binaries bundled into dcmqi docker image can run
COMP: Add regression test "docker_image_test"
Michael Onken (34):
Permit manual builds.
Also allow manual builds on Mac OS X.
Better name for Mac OS build job.
Split up some build steps for debugging.
Cache ITK, DCMTK and ZLIB for dcmqi build.
Remove circle ci references. Consistency fixes.
Removed old CI files, added GH CI status badges.
Fix Windows Release publishing.
WIP: Introduce OverlapUtil
Separate build and publish phase in CI.
Don't release if user is not QIICR.
List workspace content.
Add manual workflow run.
Revert "Add manual workflow run."
Revert "List workspace content."
WIP: Fully integrated code producing first results.
Better error handling.
Fix Image Origin bug and speed up processing.
Error handling.
WIP: Fix assignment of frames to NRRD, speedup.
ENH: Don't check functional groups (speedup)
Only publish on master and on qiicr/dcmqi repo.
Fix accidentially commited typo.
Cleanups, robustness, documentation.
Refactored converter classes.
Fixed tests and bug, minor changes.
Try to fix Linux docker build.
New method for finding frame sorting coordinate.
Return result image by image to save memory.
Try to fix compile error on Windows.
Another fix for windows build errors.
Replace use of deprecated jsoncpp class.
Fix bug when creating JSON output for merges.
Added test for merging segments into NRRD files.
Tobias Weihs (2):
support for new dcmtk targets
find dcmtk and itk in exported config, removed hard coded dcmtk path
Vamsi Thiriveedhi (1):
BUG: fix release package publishing
v1.2.5
$ git shortlog v1.2.4..v1.2.5 --no-merges
Andrey Fedorov (12):
ENH: switch from ceil() to round() for slice number calculation
CI: fix TravisCI
ENH: update TravisCI badge location
ENH: update TravisCI pointer
ENH: update docker badge
COMP: will it work with C++ 14?
BUG: fix initialization of referenced instances
COMP: use https instead of git for clones
BUG: check for in-plane consistency of seg size
CI: migrate to Ubuntu 20.04
BUG: register RLE codecs before loading data
cmake: Set DCMQI version to 1.2.5
Jean-Christophe Fillion-Robin (2):
COMP: Fix Slicer extension build by not forcing CMAKE_CXX_STANDARD value
COMP: Simplify setting of CMAKE_CXX_STANDARD defaulting to C++14
Tobias Weihs (3):
install config with correct paths
install generated internal include directory
removed unnecessary include
v1.2.4
This is a maintenance patch release with the following fixes:
- improve precision of encoding floating point numbers
- fix incorrect handling of row/column spacing, which affected non-square segmentations with anisotropic spacint
- fix incorrect handling of segmentations that resulted in total number of pixels not divisible by 8 (DCMTK bug)
- superbuild updated to use DCMTK 3.6.6 with an additional backported commit
- cleanup of cmake to support integration with external tools, contributed by Tobias Weihs
$ git shortlog v1.2.3..v1.2.4 --no-merges
Andrey Fedorov (6):
CI: add print for debugging
CI: remove print
BUG: PixelSpacing order incorrect on read
ENH: update DCMTK to 3.6.6 patched for seg
CI: update DCMTK package to 3.6.6_patched
cmake: Set DCMQI version to 1.2.4
Stefan Dinkelacker (1):
BUG: serialize floats with maximum precision
Tobias Weihs (10):
added guard to ensure segmentation object is deleted
#419 do not delete a shallow copied frame, only delete if necessary
#421 added overload taking a seg object, for this overload the json meta generation is optional
replaced nullptr by NULL macro
cannot use auto
no cpp11
force DCMTK build to link dynamic runtime library to avoid mixing static vs dynamic
added missing headers
made include directories pointing into build directory build dependent
added target export installing if superbuild is disabled
v1.2.3
This is a maintenance release updating the use of coded terms to SCT, and resolving minor bugs.
$ git shortlog v1.2.2..v1.2.3 --no-merges
Andras Lasso (2):
BUG: Fix loading of single-frame segmentation
ENH: Added detailed logging option to itkimage2segimage and segimage2itkimage
Andrey Fedorov (21):
ENH: update to DCMTK 3.6.5
COMP: remove use of CERR and COUT
COMP: update DCMTK/ITK to fix static link issue
BUG: update SRT to SCT codes
BUG: fix SR roundtrip test by checking for SCT codes
ENH: check both SCT and SRT codes
ENH: add cardinality constraint to the schemas
ENH: revise multi-segment example
ENH: compare to epsilon instead of zero
BUG: remove midas pointers
BUG: create a new example
ENH: improve seg conversion support
BUG: fix typos
ENH: update the documentation link
update support options
update readme
ENH: initialize SegmentsOverlap for simple case
BUG: switch to dcmtk for CIELab conversion
ENH: switch to CIELab conversion from @dclunie
BUG: downgrade ajv to 3.3.0
cmake: set dcmqi version to 1.2.3
Steve Pieper (1):
COMP: turn of SNDFILE to fix include path
afshinmessiah (6):
Replaced the srt code with sct codes (the ones are available at snomed dictionary of pydicom)
Added the PYTHON script which replaces srt wiht sct
Used dcm.h macros instead of direct code strings for dcm codes. The list was incomplete for sct&ucum
Got the reader to read both srt/sct codes
Replaced all SRT wiht their SCT counterparts except for 4: (1)G-C306 "Measurement Method" (2)A-10044 "Non-Lesion Object Type" (3)T-00317 "FindingSite" (4)R-404A4 "Entire"
Final step SRT to SCT conversion (1) 'G-C306'-->'370129005' (2) 'A-10044'-->'111102' (3) 'T-00317'-->'55940004' (4) 'R-404A4'-->'255503000'
v1.2.2
This is a minor release, and the last one before updating to DCMTK 3.6.5
$ git shortlog v1.2.1..v1.2.2 --no-merges
Andrey Fedorov (7):
ENH: add warning if composite context is not initialized
ENH: add SEG SegmentLabel support
ENH: improve error reporting for seg converter
ENH: improve error handling
BUG: fix and add missing codes to the Slicer terminology file
ENH: populate 3dSlicerIntegerLabel in JSON seg context
cmake: update version to v1.2.2