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Andrey Fedorov edited this page Mar 10, 2016 · 2 revisions

Overlay SEG using Pixelmed tools

1 - convert image data into multiframe:

java -Xmx512m -Xms512m -cp "./pixelmed.jar:./lib/additional/hsqldb.jar:./lib/additional/excalibur-bzip2-1.0.jar:./lib/additional/vecmath1.2-1.14.jar:./lib/additional/jmdns.jar:./lib/additional/commons-codec-1.3.jar:./lib/additional/jai_imageio.jar" com.pixelmed.dicom.MultiFrameImageFactory <input_folder> <output_folder>

2 - overlay

java -Xmx512m -Xms512m -cp "./pixelmed.jar:./lib/additional/hsqldb.jar:./lib/additional/excalibur-bzip2-1.0.jar:./lib/additional/vecmath1.2-1.14.jar:./lib/additional/jmdns.jar:./lib/additional/commons-codec-1.3.jar:./lib/additional/jai_imageio.jar" com.pixelmed.display.SuperimposedDicomImage <multiframe_image> <segmentation>
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