Quickfix, using core without specifying cpus crashes runs on uppmax

[alneberg]

Uppmax remaps jobs from the core queue to the node queue if a core job uses all the cpus available for a node.

The processes MergeBam and ConcatVCF had configs like this, which caused Nextflow to not see them in the queue and therefore shut down after 7min ( default cutoff). This quickfix should avoid this. Hopefully another PR with a more complete change of the config will come after, but this is more important.

PR checklist

• PR is made against dev branch
• PR is a hotfix against master branch
• This comment contains a description of changes (with reason)
• If you've fixed a bug or added code that should be tested, add tests!
• Ensure the test suite passes (./scripts/test.sh -p docker -t ALL).
• Documentation in docs is updated
• CHANGELOG.md is updated
• README.md is updated

[maxulysse]

I see, so you think it's this remapping of queue that's causing this issue?