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Quickfix, using core without specifying cpus crashes runs on uppmax #749

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Mar 7, 2019
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Quickfix, using core without specifying cpus crashes runs on uppmax #749

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44e3161
Quickfix, using core without specifying cpus crashes runs on uppmax
alneberg Mar 7, 2019
ac85bfb
Merge branch 'dev' of https://github.com/SciLifeLab/Sarek into better…
alneberg Mar 7, 2019
a2fda7f
Updated changelog
alneberg Mar 7, 2019
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5 changes: 5 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -5,6 +5,11 @@ All notable changes to this project will be documented in this file.
The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html).

## Unreleased

### `Fixed`
- [#749](https://github.com/SciLifeLab/Sarek/pull/749) - Fix config problematic use of queue `core` for uppmax-slurm

## [2.3.FIX1] - 2019-03-04

### `Fixed`
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3 changes: 0 additions & 3 deletions conf/uppmax-slurm.config
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Expand Up @@ -38,7 +38,6 @@ process {
withName:BuildVCFIndex {
}
withName:ConcatVCF {
queue = 'core'
}
withName:CreateRecalibrationTable {
cpus = 10
Expand All @@ -55,8 +54,6 @@ process {
memory = {2 * params.singleCPUMem}
}
withName:MergeBams {
memory = {params.singleCPUMem * task.attempt}
queue = 'core'
time = {params.runTime * task.attempt}
}
withName:RecalibrateBam {
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