v0.1.28

SBMLToolkit v0.1.28

Diff since v0.1.27

Merged pull requests:

• CompatHelper: bump compat for SymbolicUtils to 3, (keep existing compat) (#164) (@github-actions[bot])
• Fix Cobraexa URL (#165) (@oxinabox)

v0.1.27

SBMLToolkit v0.1.27

Diff since v0.1.26

Merged pull requests:

• Support Catalyst v14 (#163) (@paulflang)

v0.1.26

SBMLToolkit v0.1.26

Diff since v0.1.25

Merged pull requests:

• Bump actions/checkout from 3 to 4 (#133) (@dependabot[bot])
• Documenter 1.0 upgrade (#135) (@ArnoStrouwen)
• Update README.md (#137) (@paulflang)
• typos + Aqua CI (#138) (@ArnoStrouwen)
• Bump actions/upload-artifact from 3 to 4 (#139) (@dependabot[bot])
• Bump actions/checkout from 3 to 4 (#140) (@dependabot[bot])
• Downgrade CI (#142) (@ArnoStrouwen)
• Bump crate-ci/typos from 1.16.23 to 1.17.0 (#143) (@dependabot[bot])
• Bump actions/cache from 3 to 4 (#145) (@dependabot[bot])
• Bump codecov/codecov-action from 3 to 4 (#147) (@dependabot[bot])
• Bump crate-ci/typos from 1.17.0 to 1.18.0 (#148) (@dependabot[bot])
• [skip ci] Update dependabot.yml (#149) (@ArnoStrouwen)
• ci: explicitly specify token for codecov (#150) (@thazhemadam)
• [skip ci] update downgrade CI repo (#151) (@ArnoStrouwen)
• Bump julia-actions/setup-julia from 1 to 2 (#153) (@dependabot[bot])
• Add citation file (#154) (@paulflang)
• Bump actions/checkout from 3 to 4 (#155) (@dependabot[bot])
• Add citation.cff (#159) (@paulflang)
• omit conversion to mass action for stoichiometries > 100 to avoid StackOverflow in simplify_fractions (#161) (@paulflang)

Closed issues:

• Failing CI for v0.1.21 (#118)
• Error constructing reaction system from SBML BioModel (#160)

v0.1.25

SBMLToolkit v0.1.25

Diff since v0.1.24

Merged pull requests:

• Support initialAssignments with the DefaultImporter (#132) (@paulflang)

v0.1.24

SBMLToolkit v0.1.24

Diff since v0.1.23

Merged pull requests:

• return correct variable type/metadata in map_symbolics_ident (#130) (@paulflang)

v0.1.23

SBMLToolkit v0.1.23

Diff since v0.1.22

Merged pull requests:

• fix handling g of duplicate speciesReference (#127) (@paulflang)
• format (#128) (@paulflang)

v0.1.22

SBMLToolkit v0.1.22

Diff since v0.1.21

Merged pull requests:

• enable dependabot for GitHub actions (#119) (@ranocha)
• Bump actions/checkout from 1 to 3 (#120) (@dependabot[bot])
• Bump actions/cache from 1 to 3 (#121) (@dependabot[bot])
• Bump codecov/codecov-action from 1 to 3 (#122) (@dependabot[bot])
• handle params with initialAssignment (#123) (@paulflang)
• add joss paper (#124) (@paulflang)
• Create draft-pdf.yml (#125) (@paulflang)
• Bump actions/upload-artifact from 1 to 3 (#126) (@dependabot[bot])

v0.1.21

SBMLToolkit v0.1.21

Diff since v0.1.20

Merged pull requests:

• CompatHelper: bump compat for SymbolicUtils to 1, (keep existing compat) (#104) (@github-actions[bot])
• various doc and style improvements (#109) (@ArnoStrouwen)
• CompatHelper: bump compat for Catalyst to 13, (keep existing compat) (#110) (@github-actions[bot])
• support Catalyst v13 (#111) (@paulflang)
• Pl/catalistv0.13 (#112) (@paulflang)
• Pl/catalystupdate (#113) (@paulflang)
• Pl/rescue20230303 (#114) (@paulflang)
• Pl/simplify api (#115) (@paulflang)
• update docs (#116) (@paulflang)
• Fix formatting (#117) (@SebastianM-C)

v0.1.20

SBMLToolkit v0.1.20

Diff since v0.1.19

Closed issues:

• Write better docstrings (#22)
• Warning: SBMLToolkit currently fires events regardless of uppass or downpass trigger. (#101)

Merged pull requests:

• use SBML converter that retains initialAssignment (#107) (@paulflang)
• disable converting nonconstant parameters to states (#108) (@anandijain)

v0.1.19

SBMLToolkit v0.1.19

Diff since v0.1.18

Closed issues:

• why are we warning about events regardless of if the model has events? (#91)

Merged pull requests:

• Fix broken libSBML link in docs (#99) (@xlxs4)
• Only warn for events if model has events (#100) (@xlxs4)